User: esnolli

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esnolli50
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10 months ago
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2 years, 4 months ago
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Posts by esnolli

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Comment: C: Mapping mutations to TCGA samples
... Thanks a lot, just right I was looking for! ...
written 20 months ago by esnolli50
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Mapping mutations to TCGA samples
... Hello everyone, I am interested in analyzing some data from TCGA, specifically the LAML project. From there I managed to download the HTSeq counts for the whole cohort, however I would like to map each sample to specific mutations for given set of genes in order to perform DE analysis between pools ...
maf tcga rna-seq mut written 20 months ago by esnolli50 • updated 8 months ago by Biostar ♦♦ 20
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Comment: C: Use of Viper with a regulatory network built with my dataset or another one?
... Hi Idetorrente, I am currently using Viper for trying to predict the TF activity of different datasets with ARACNe generated networks. My ARACNe networks comes from scRNA seq and I want to use bulk RNA seq and microarrays signatures to try to infer TF activity in those samples. However, they differ ...
written 2.2 years ago by esnolli50
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Answer: A: Analysis of sc-RNA data
... Hello halo22, I am new here, as well as in the world in Bioinformatics. However, I am trying to analyze scRNA-seq data as you may be doing at this moment. For scater there is a wonderful vignette (https://bioconductor.org/packages/devel/bioc/vignettes/scater/inst/doc/vignette.html) and I found als ...
written 2.4 years ago by esnolli50

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