User: simang5c

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simang5c10
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Posts by simang5c

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Comment: C: RNA-Seq Data analysis FPKM values mostly showing 0
... Thank you so much.. I will look into it! ...
written 7 weeks ago by simang5c10
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RNA-Seq Data analysis FPKM values mostly showing 0
... Hi Everyone! I have Human RNA-Seq data downloaded from NCBI, for which I am performing data analysis. I aligned the reads using tophat2 by providing the premade indices from GRCh38.fa and GRCh38.chr.gtf. After aligning and assembling with Cufflinks when I checked the transcripts.gtf file; most FPKM ...
assembly rna-seq rseqc written 8 weeks ago by simang5c10
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Seed and Kegg analysis in Megan 5
... Hi everyone I have a BlastNT.xml file and I tried to perform KEGG and Seed analysis using the kegg and seed mapping files gi2kegg-Aug2016X-ue.bin, gi2seed.map respectively. Since It Is a BlastNT file there is no Ref SEQ Id. I used the GI id. Setting Min score as 50, Min support 1 and LCA percent ...
metagenomics ngs megan written 4 months ago by simang5c10

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