User: jmannhei

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jmannhei0
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Posts by jmannhei

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FRMA processing on two different datasets of affy u133A not same dimensions
... Hi all. I have the original NCI60 dataset .CEL files that are on affymetrix hg-u133A chips, then I have another data sets that are also on affy u133A chips. When I try to normalize them together with frma I get the following Error in affyio::read_abatch(filenames, rm.mask, rm.outliers, rm.extra, ...
R u133a affy frma forum written 5 months ago by jmannhei0 • updated 5 months ago by Benn7.4k
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Perturbation Cancer cell line data
... Hi all, I was wondering if anybody new of a database of perturbation experiments in cancer cell lines where there are pre and post treatment RNA-SEQ or microarray data. I looking for particularly for Methotrexate, Vinblastine, Vorinostat, Cisplatin, and Gemcitabine. Thanks ...
gene cytotoxics rna-seq cancer written 7 months ago by jmannhei0 • updated 7 months ago by Pappu1.9k
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Scan Dates will not show
... Hi All, I am trying to acquire scan dates so I can obtain batch information to run ComBat. However, when I try to look at the Scan Dates all I get is 'NA'. I have been able to get Scan Dates on other .CEL files with the same code so I am not sure what is going on. Here is my code filena ...
bioconductor affy combat written 2.4 years ago by jmannhei0

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