User: anitha.b

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anitha.b0
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Posts by anitha.b

<prev • 4 results • page 1 of 1 • next >
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Rna seq Denovo assembly
... Hi, I want to run rna seq, but there is no reference that's why i m trying to run trinity. The problem is, trinity takes all the samples for assembly, but my data is large so can i take some samples and run trinity is possible? if yes what is the criteria for selecting samples to run trinity.. Tha ...
trinity sequence rna-seq alignment written 24 days ago by anitha.b0 • updated 24 days ago by aniruddhapandit0
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LNC Exploratory analysis
... Hi, Anybody suggest me that, is any exploratory analysis for particularly LNC genes. Thank you, Anitha ...
software error gene rna-seq written 3 months ago by anitha.b0
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Tophat and Bowtie2
... Hi, One of my sequnce data is aligned with tophat, alignment rate is 6%. If the same sequence is aligned with bowtie2 means, alignment rate is 96%. why i am getting less alignment rate in tophat compared to bowtie2? Any suggestions please. Thanks, Anitha ...
alignment sequence rna-seq written 4 months ago by anitha.b0 • updated 4 months ago by Chirag Parsania430
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rna seq analysis
... Hi, I have gencode long non coding(lnc) gtf and lnc reference fasta files.. if i run tophat using these two references, i am getting an error "gtf_to_fasta returned an error". how to solve this??? any suggestions please. Thank you Anitha ...
rna-seq written 8 months ago by anitha.b0 • updated 3 months ago by Bruce0

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