User: anitha.b

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anitha.b0
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Posts by anitha.b

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Gene set enrichment Analysis
... I am using official GSEA tool from Broad Institute only ...
written 4 months ago by anitha.b0
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Comment: A: Gene set enrichment Analysis
... Thank you for your reply Michael. I am using GSEA for the annotation of rna seq analysis after completing cuffdiff and i am running analysis in my local system after creating .cls and .txt file. (.txt file from raw counts) Thanks Anitha ...
written 4 months ago by anitha.b0
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Gene set enrichment Analysis
... Hi, I am running GSEA for Gene Ontology(C5), Immunology(C7) and oncology(C6). But i am getting results as a pdfs only for Immunology and Oncology. why i am not getting results for Gene ontology?? (reference organism is HUMAN) Thank you, Anitha ...
genome rna-seq written 4 months ago by anitha.b0
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Rna seq Denovo assembly
... Hi, I want to run rna seq, but there is no reference that's why i m trying to run trinity. The problem is, trinity takes all the samples for assembly, but my data is large so can i take some samples and run trinity is possible? if yes what is the criteria for selecting samples to run trinity.. Tha ...
trinity sequence rna-seq alignment written 5 months ago by anitha.b0 • updated 5 months ago by aniruddhapandit0
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LNC Exploratory analysis
... Hi, Anybody suggest me that, is any exploratory analysis for particularly LNC genes. Thank you, Anitha ...
software error gene rna-seq written 8 months ago by anitha.b0
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Tophat and Bowtie2
... Hi, One of my sequnce data is aligned with tophat, alignment rate is 6%. If the same sequence is aligned with bowtie2 means, alignment rate is 96%. why i am getting less alignment rate in tophat compared to bowtie2? Any suggestions please. Thanks, Anitha ...
alignment sequence rna-seq written 9 months ago by anitha.b0 • updated 9 months ago by Chirag Parsania430
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rna seq analysis
... Hi, I have gencode long non coding(lnc) gtf and lnc reference fasta files.. if i run tophat using these two references, i am getting an error "gtf_to_fasta returned an error". how to solve this??? any suggestions please. Thank you Anitha ...
rna-seq written 12 months ago by anitha.b0 • updated 8 months ago by Bruce0

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