User: Corentin
Corentin • 20
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Posts by Corentin
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... Hi,
There are already a few tools out there for CNV detection: [https://omictools.com/cnv-detection2-category][1] . They are often specialised in Exome sequence data.
You can take a look at how they work. Their implementation is described in the associated paper (when there is one).
I know that ...
written 3 months ago by
Corentin • 20
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... Thank you for your answer,
I had a look with IGV and these transcripts are indeed overlapping isoforms (they are almost the same). ...
written 3 months ago by
Corentin • 20
3
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... Hi,
I ran the tuxedo pipeline on rna seq data. And I used RSEM/limma for the differential expression analysis.
I noticed something peculiar in the counts matrix from RSEM, some transcripts have exactly the same expression level for all the samples:
"TCONS_00086761" 46.23 46.23 61.4 ...
written 3 months ago by
Corentin • 20
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