User: plabanbiswas96

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Posts by plabanbiswas96

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Comment: C: Need library for implementation of DNA Alignment
... I have looked into BBMap. Is there a documentation of the java files (like purpose of each file) ? Also an example of mapping would be greatly appreciated. ...
written 15 months ago by plabanbiswas9610
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Comment: C: Need library for implementation of DNA Alignment
... Sorry for that but I required maven for building my college project (jbwa would be a great boost for it ) and also IntelliJ is not able to resolve **this.bwaService=new BWAServiceImplService().getBWAServiceImplPort();** . Sorry for this but I am trying JNI for the first time and I am getting confuse ...
written 15 months ago by plabanbiswas9610
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Comment: C: Need library for implementation of DNA Alignment
... When I compile through Maven, I get error stating cannot find symbol BWAServiceImplService. ...
written 15 months ago by plabanbiswas9610
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Need library for implementation of DNA Alignment
... I am new to Bioinformatics. Can someone suggest a good library for DNA Alignment Library like BWA (not in Java) which can be used in Java and if possible output a SAM file. ...
java alignment sequencing written 15 months ago by plabanbiswas9610 • updated 15 months ago by Brian Bushnell15k
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Comment: C: Suggestion for algorithms for DNA Mapping
... Thanks, I will try burrows wheeler aligner and will ping back if there are any queries. ...
written 16 months ago by plabanbiswas9610
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Suggestion for algorithms for DNA Mapping
... Hello, My project is mapping of DNA to reference genome (hg19). I would be working in java and would be running on Hadoop. I am stuck at selection of algorithms for mapping to reference genome. I came across various algorithms for mapping but can't figure out which would suit the purpose of mapping ...
java dna mapping algorithm written 16 months ago by plabanbiswas9610
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Comment: C: Why is Hadoop not used a lot in bio-informatics?
... With Hadoop 2.0 which implements YARN instead of MapReduce as resource manager (suitable for streaming applications), Bioinformatics should just be the field for it. ...
written 17 months ago by plabanbiswas9610
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Comment: C: What are the various procedures involved in DNA Mapping ?
... Thanks for the information and swift reply :-) ...
written 17 months ago by plabanbiswas9610
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Comment: C: What are the various procedures involved in DNA Mapping ?
... So, as far my understanding goes DNA sequence is present in FASTQ format, then it is mapped against a Reference genome which creates a SAM file and the SAM file has coordinates of mapped DNA. Right? ...
written 17 months ago by plabanbiswas9610
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What are the various procedures involved in DNA Mapping ?
... Hello, I am new to the field of BioInformatics, I have selected DNA Mapping using hadoop as my project and I will using java for this project (maven for build). I need to know what are the steps for DNA Mapping (like which file formats are required for input, how to map it to reference genome and w ...
genome java sequencing fastq sam written 17 months ago by plabanbiswas9610

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