User: plabanbiswas96

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Posts by plabanbiswas96

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Comment: C: Need library for implementation of DNA Alignment
... I have looked into BBMap. Is there a documentation of the java files (like purpose of each file) ? Also an example of mapping would be greatly appreciated. ...
written 5 months ago by plabanbiswas9610
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Comment: C: Need library for implementation of DNA Alignment
... Sorry for that but I required maven for building my college project (jbwa would be a great boost for it ) and also IntelliJ is not able to resolve **this.bwaService=new BWAServiceImplService().getBWAServiceImplPort();** . Sorry for this but I am trying JNI for the first time and I am getting confuse ...
written 5 months ago by plabanbiswas9610
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Comment: C: Need library for implementation of DNA Alignment
... When I compile through Maven, I get error stating cannot find symbol BWAServiceImplService. ...
written 5 months ago by plabanbiswas9610
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Need library for implementation of DNA Alignment
... I am new to Bioinformatics. Can someone suggest a good library for DNA Alignment Library like BWA (not in Java) which can be used in Java and if possible output a SAM file. ...
java alignment sequencing written 5 months ago by plabanbiswas9610 • updated 5 months ago by Brian Bushnell14k
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Comment: C: Suggestion for algorithms for DNA Mapping
... Thanks, I will try burrows wheeler aligner and will ping back if there are any queries. ...
written 6 months ago by plabanbiswas9610
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Suggestion for algorithms for DNA Mapping
... Hello, My project is mapping of DNA to reference genome (hg19). I would be working in java and would be running on Hadoop. I am stuck at selection of algorithms for mapping to reference genome. I came across various algorithms for mapping but can't figure out which would suit the purpose of mapping ...
java dna mapping algorithm written 6 months ago by plabanbiswas9610
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Comment: C: Why is Hadoop not used a lot in bio-informatics?
... With Hadoop 2.0 which implements YARN instead of MapReduce as resource manager (suitable for streaming applications), Bioinformatics should just be the field for it. ...
written 7 months ago by plabanbiswas9610
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Comment: C: What are the various procedures involved in DNA Mapping ?
... Thanks for the information and swift reply :-) ...
written 7 months ago by plabanbiswas9610
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Comment: C: What are the various procedures involved in DNA Mapping ?
... So, as far my understanding goes DNA sequence is present in FASTQ format, then it is mapped against a Reference genome which creates a SAM file and the SAM file has coordinates of mapped DNA. Right? ...
written 7 months ago by plabanbiswas9610
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What are the various procedures involved in DNA Mapping ?
... Hello, I am new to the field of BioInformatics, I have selected DNA Mapping using hadoop as my project and I will using java for this project (maven for build). I need to know what are the steps for DNA Mapping (like which file formats are required for input, how to map it to reference genome and w ...
genome java sequencing fastq sam written 7 months ago by plabanbiswas9610

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