User: mcalleja

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mcalleja90
Reputation:
90
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Trusted
Location:
Pamplona
Last seen:
3 months, 2 weeks ago
Joined:
2 years, 11 months ago
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Posts by mcalleja

<prev • 4 results • page 1 of 1 • next >
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Answer: A: Finding DEGenes taking into account the DEG of a compared control condition
... I've found the answer I was looking for, after reading the [Limma's User guide][1] Section 9.5 Interaction Models: 2 × 2 Factorial Designs 9.5.1 Questions of Interest The experiment that is described there is exactly what we have. The basic design is precisely that one. I just need to see if I ca ...
written 4 months ago by mcalleja90
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Finding DEGenes taking into account the DEG of a compared control condition
... Hi. I have the following problem: The wet lab has prepared four samples (with one replicate). (It's not a paired problem) Control phase 1, control phase 2 Treatment phase 1, treatment phase 2 We are interested in finding differential sgRNAs between treatment phase 1 and treatment phase 2. BUT we ...
R sgrna limma rna-seq edger written 4 months ago by mcalleja90
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Comment: C: Interpreting TCGA .rsem.genes.results and .rsem.genes.normalized_results files.
... The link is private! ...
written 2.3 years ago by mcalleja90
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Answer: A: Gene names in Ballgown differential expression analysis
... Hi! I want to contribute the answer that [AlyssaFrazee][1] gave on Ballgown's github to retrieve GenesName (it's not intuitive, but rather a good workaround) [Add geneNames to result of stattest on feature gene][2]: indices <- match(results_genes$id, texpr(bg, 'all')$gene_id) gene_name ...
written 3.0 years ago by mcalleja90

Latest awards to mcalleja

Good Answer 11 months ago, created an answer that was upvoted at least 5 times. For A: Gene names in Ballgown differential expression analysis
Supporter 14 months ago, voted at least 25 times.
Appreciated 2.2 years ago, created a post with more than 5 votes. For A: Gene names in Ballgown differential expression analysis
Teacher 2.2 years ago, created an answer with at least 3 up-votes. For A: Gene names in Ballgown differential expression analysis

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