User: nina.naitatmane

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Posts by nina.naitatmane

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CNVKIT scatter --range-list
... hello, Can anyone help me in using the cnvkit scatter command with a range-list? I tried to use it with a bed file like an argument (-l test.bed) like this and it didn't work: chr1 115252151 115252273 NRAS_ex4 chr1 115252262 115252370 NRAS_ex4 chr1 115256334 115256449 NRAS_ex3 chr1 115256438 1152565 ...
cnv written 1 day ago by nina.naitatmane10
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Comment: C: cnvkit , antitarget , cn , call cnv
... thank you, this helped me. how can interpret results, biologists on my lab are looking only for MET gen and its CNV ? thank you again ...
written 5 days ago by nina.naitatmane10
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cnvkit , antitarget , cn , call cnv
... hello, Im using CNVkit on amplicon sequencing with ion torrent. we don't have normal samples. and antitargets are not really helpfull in our situation, i have big insertion and no deletion in results . Is cnvkit still usefull? Can we use cnvkit without antitarget ? call command gives as a new eleme ...
cnv written 8 days ago by nina.naitatmane10 • updated 8 days ago by Eric T.1.6k
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Log 2 in CNV
... hello, I'd like to know why do we use log2 in Copy Number Variation détection ? How does it normalize data Thank you ...
cnv written 15 days ago by nina.naitatmane10 • updated 9 days ago by Eric T.1.6k
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CNVkit reference.cnn .cnr .cns log ratio
... hello, I'm trying to use cnvkit on ion torrent ngs data to detect CNVs. i'm not biologist at all, I have vague knowledge about CNVs, that's why i'm looking for someone who can help me to understand what is the reference.cnn file? and what are file extension .cns and .cnr? inorder in interpret the ...
cnvkit cnv written 17 days ago by nina.naitatmane10 • updated 9 days ago by Eric T.1.6k
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Comment: C: CNV detection techniques, algorithms, applications ...
... Thank you, it really helps, but I didn't understand the strategies :RD ,PEM, RC ..... If you have some article about that, I would be gratefull. Thank you ...
written 5 weeks ago by nina.naitatmane10
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Answer: A: CNV detection techniques, algorithms, applications ...
... Oh, Thanks a lot for your help :) ...
written 5 weeks ago by nina.naitatmane10
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CNV detection techniques, algorithms, applications ...
... Hello everyone, I'm a computer science student. For my intership, I have to implement a solution to detect CNV in NGS data, in a Cancer Institute. It's new domain for me, any help to understand existant methods and solutions, algotithms used, tutoriels ... Any help is welcome (in french or in engli ...
next-gen sequence algorithms cnv written 5 weeks ago by nina.naitatmane10

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