User: kevin.o.oluoch

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Kenya
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Posts by kevin.o.oluoch

<prev • 17 results • page 1 of 2 • next >
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Comment: C: CWL: specifing one or more argument
... making a `CommandLineTool` that generates command lines. But i'd appreciate an implementation specific answer, if this is not possible. ...
written 2.2 years ago by kevin.o.oluoch70
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CWL: specifing one or more argument
... Is there a way in Common Workflow Language, to specify one or more values for a given Command line tool input, that will make ./echo.cwl --cheers Hello World! similar to, ./echo.cwl --cheers "Hello World!" `./echo.cwl --cheers Hello World!` raises the following error `./echo.cwl error ...
one inputs cwl args more written 2.2 years ago by kevin.o.oluoch70 • updated 23 months ago by Michael R. Crusoe1.7k
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CWL: A relative path as input
... I have a Common Workflow Language script that takes a single sample file as input. I'd like to use it to run several files. I've looked at the scatter feature but it requires an array. How can i use a relative path to the input files to run several samples files? ...
cwl relative path multiple inputs written 2.3 years ago by kevin.o.oluoch70
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CWL: SLurm Job Sheduler
... Does the slurm job scheduler work with Common Workflow Language implementations? How can I use it to run multiple files? ...
slurm cwl written 2.3 years ago by kevin.o.oluoch70 • updated 4 months ago by Biostar ♦♦ 20
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Comment: C: CWL: SoftwareRequirement definition
... This is helpful, I will just `module load spades` before running the script ...
written 2.3 years ago by kevin.o.oluoch70
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CWL: SoftwareRequirement definition
... I'm trying to create a common workflow language script, to run on a server, that requires spades be initialized with the command `module load spades` my requirements section looks like this requirements: SoftwareRequirement: packages: spades: specs: [ "modu ...
cwl softwarerequirement specs written 2.3 years ago by kevin.o.oluoch70 • updated 2.3 years ago by Michael R. Crusoe1.7k
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Comment: C: CWL: Comments in Common Workflow Language
... Thanks a lot I was getting confused especially with hash tags. I guess this will be helpful to many people who may have noticed the use of the three types of comments. ...
written 2.4 years ago by kevin.o.oluoch70
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CWL: Comments in Common Workflow Language
... I have a couple of questions about comments or documenting in CWL. 1a. What is the difference between 'doc' and 'label' in CWL? 1b. What are the special cases in which one is better than the other? 2a. Are line that start with hash tags, also comments? 2b. if no, what is the use of hash tags? i ...
common workflow language comments label cwl doc written 2.4 years ago by kevin.o.oluoch70 • updated 2.4 years ago by Michael R. Crusoe1.7k
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Comment: C: CWL: Getting the outputs(File) of a command line tool
... Thanks, This is very Helpful ...
written 2.4 years ago by kevin.o.oluoch70
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Comment: C: CWL: Getting the outputs(File) of a command line tool
... This does not solve my original issue. Kindly see the change I've made to the question ...
written 2.4 years ago by kevin.o.oluoch70

Latest awards to kevin.o.oluoch

Popular Question 2.0 years ago, created a question with more than 1,000 views. For CWL: Loops and if conditionals
Popular Question 2.0 years ago, created a question with more than 1,000 views. For CWL: Getting the outputs(File) of a command line tool
Student 2.0 years ago, asked a question with at least 3 up-votes. For CWL: Loops and if conditionals

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