User: tiancaigg
tiancaigg • 10
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Posts by tiancaigg
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... Thanks. I rename the files and it works. ...
written 6 days ago by
tiancaigg • 10
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... oh it works. I didn't notice that what behind "S1" is also required by the pipeline's regex. Thanks ...
written 6 days ago by
tiancaigg • 10
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... `/mnt/Donghui_shared/Ann_SC_2020/X401SC21012937-Z01-F001/raw_data/JAL_1h » ls -a`
JAL_1h-AK3563_S2_L001_HG2VYCCX2_I1_001.fastq.gz JAL_1h-AK3564_S3_L001_HG2VYCCX2_R2_001. ...
written 6 days ago by
tiancaigg • 10
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... same error, any updates
Traceback (most recent call last):
File "/home/hu/anaconda3/bin/hisat2_read_statistics.py", line 210, in
reads_stat(args.read_file, args.read_count)
File "/home/hu/anaconda3/bin/hisat2_read_statistics.py", line 168, in reads_stat
for id, s ...
written 6 months ago by
tiancaigg • 10
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... I got similar problem. have you find a solution? ...
written 9 months ago by
tiancaigg • 10
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... For example, I want to know the co-unregulated genes of Arabidopsis treated with different pathogens, can I just intersect their RNA-seq results? How can I join their p-values? Will this make statistical meaning? ...
written 23 months ago by
tiancaigg • 10
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... I've been performing RNA-seq according to https://bioinformatics.uconn.edu/rnaseq-arabidopsis/ , following the hisat2-stringtie-ballgown pipeline, but it gave very high p-value and q-value, I've tried many different parameters, but it doesn't change. I am not sure if there are anything wrong in my p ...
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... sudo cpan Mozilla::CA
solved... it takes days googling...thank you
...
written 3.8 years ago by
tiancaigg • 10
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how to solve this? I don't know how to install Mozilla::CA module on OS X.
➜ ~ efetch -db nuccore -id AF086833 -format gb > AF086833.gb
500 Can't verify SSL peers without knowing which Certificate Authorities to trust
No do_post output returned from 'https://eutils.ncbi.nlm.nih ...
written 3.8 years ago by
tiancaigg • 10
Latest awards to tiancaigg
Popular Question
7 months ago,
created a question with more than 1,000 views.
For hisat2-stringtie-ballgown pipeline gives high p-value and q-value for RNA-seq of Arabidopsis thaliana
Great Question
21 months ago,
created a question with more than 5,000 views.
For 500 Can't verify SSL peers without knowing which Certificate Authorities to trust
Popular Question
3.8 years ago,
created a question with more than 1,000 views.
For 500 Can't verify SSL peers without knowing which Certificate Authorities to trust
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