User: keryruo

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keryruo0
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Posts by keryruo

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Answer: A: HOMER find motifs from BED data
... To avoid this error, add the homer/bin directory to your executable path(~/.bash_profile file). two steps: (1) vim ~/.bash_profile (add a line) (2) source ~/.bash_profile you can check install instruction in official url: http://homer.ucsd.edu/homer/introduction/instal ...
written 3 days ago by keryruo0
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Comment: C: Strandedness Of Homer For Motif Analysis
... I've tried setting 3 different arguments for the strand(+-.),after comparison of the HOMMER annotation(annotatePeaks.pl peak.bed hg19 > peak.anno ),results related to these 3 strand arguments were all the same.So you guys don't have to worry about the strand infor ...
written 9 months ago by keryruo0
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Comment: C: Strandedness Of Homer For Motif Analysis
... Have you solved this problem? Can you give some advice? ...
written 9 months ago by keryruo0
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Comment: C: How the level 3 TCGA raw counts are calculated for each sample?
... How do you solve your problem at end?I just want to combine TCGA level 3 data with my RNAseq htseq-count to get differential expression gene.But I'm not sure what parameters to use to rerun my RNASeq raw data with MapSplice &RSEM in order to be in accordance with TCGA level 3 data. ...
written 12 months ago by keryruo0

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