User: Pierre

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Pierre0
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Posts by Pierre

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Problem with Abyss 2.0
... Hi everyone, I try to do a draft genome assembly (the input data are OK and worked fine to do an assembly with Platanus assembler) Now, I want to test Abyss 2.0 assembler. The command line was : nohup abyss-pe k=64 np=64 name=abyss-mullus lib='pea peb' mp='mpc mpd' pea='paired/paired350_R1. ...
assembly abyss written 3.2 years ago by Pierre0
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Answer: A: Tajima's D Using SNP data ONLY
... Hello, I handle the same question as you except that I only have SNP data (and their relative position on the genome). Looking closer, Tajima's D seems to only require segregating sites. So, i guess that using SNP should be adequate. Nevertheless, I am questionning on the accuracy of the Tajima's D ...
written 3.7 years ago by Pierre0

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