User: brianj.park

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brianj.park20
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Location:
Montréal, Canada
Last seen:
1 week, 3 days ago
Joined:
2 years, 10 months ago
Email:
b**********@mail.utoronto.ca

Posts by brianj.park

<prev • 5 results • page 1 of 1 • next >
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Answer: A: RNA_Seq Data Analyse
... After you imported your count table into R, you have to create a DGEList object that contains your counts, gene IDs, and sample group info needed for differential expression. Follow [this vigenette][1] and it should be straightforward. [1]: https://bioconductor.org/packages/release/workflows/v ...
written 5 weeks ago by brianj.park20
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Answer: A: Downstream RNA seq analysis
... You could take the list of differentially expressed genes and their p-values to do some gene ontology enrichment analysis. [TopGO][1] is a useful tool on R for that. [1]: https://bioconductor.org/packages/release/bioc/html/topGO.html ...
written 5 weeks ago by brianj.park20
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Answer: A: How to correctly generate alignment Stat in RNA-Seq
... Check [RSeQC:][1] in particular `bam_stat.py` [1]: http://rseqc.sourceforge.net/#bam-stat-py ...
written 5 weeks ago by brianj.park20
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Answer: A: Novel miRNA identification
... You can also give [miRge2.0][1] a try. [1]: https://github.com/mhalushka/miRge ...
written 6 weeks ago by brianj.park20
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Answer: A: Are there good reference for miRNA microRNA pathway analysis in R following edge
... Hi, Late reply but for anyone looking for resources: miRNAtap (http://bioconductor.org/packages/release/bioc/html/miRNAtap.html) from Bioconductor is a good place to look for enrichment analysis after differential expression for miRNAs. It takes miRNA input and gives you a consolidated data frame ...
written 12 months ago by brianj.park20

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