User: arjunsbaghela

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Posts by arjunsbaghela

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Answer: A: WGCNA::cor namespace issue
... I think I found a solution when working in RStudio... from the "Session" pulldown, press restart R. Then run library(WGCNA). Run search(): ".GlobalEnv", "package:WGCNA" should be the first and second characters in the vector. Then run the blockwiseModules function. Hope this works for other ...
written 4 months ago by arjunsbaghela10
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WGCNA::cor namespace issue
... Hello, I am getting this error when running WGCNA's blockwiseModules function: Error in (new("standardGeneric", .Data = function (x, y = NULL, use = "everything", : unused arguments (weights.x = NULL, weights.y = NULL, cosine = FALSE) I am pretty sure the problem is that the stats::cor func ...
wgcna cor written 4 months ago by arjunsbaghela10
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How to calculate Mutual Information between TFs and genes from RNA-seq data
... I am trying to construct a Gene Regulatory Network from RNA-sequencing data. I would like to calculate this network using Mutual Information (ie aracne). I was wondering what would the best transformation/normalization method to perform on the RNA-seq data before I feed it into any MI algorithm. I h ...
gene rna-seq mutual information written 5 months ago by arjunsbaghela10

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