User: johnsenkyle13

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Posts by johnsenkyle13

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Comment: C: Tool To Find Out If Fastq Is In Sanger Or Phred64 Encoding?
... It seems guess-encoding.py has a misleading example, suggesting `cut -f 5` instead of `cut -f 11` to grab quality strings. ...
written 9 weeks ago by johnsenkyle130
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Answer: A: RNA seq workflow
... I don't know if there's newer stuff out there (that's what I'm looking for now), but there are for sure newer, better programs than the ones you mention. [There's HISAT2, StringTie, and Ballgown for example.][1] [1]: http://nextgenseek.com/2015/03/three-papers-on-new-rna-seq-methods-offer-a-new- ...
written 6 months ago by johnsenkyle130
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Comment: C: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
... Thank you so much!!! This turned a 5.5 hour blast+ job into 25 minutes! ...
written 12 months ago by johnsenkyle130
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Comment: C: Does Ncbitblastncommandline Reads The Outfmt (Options 6, 7, And 10 ) Correctly?
... Yes, thank you! I was having this problem on blast+ on the command line when combining it with GNU Parallel. ...
written 12 months ago by johnsenkyle130

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