User: Jacob
Jacob • 10
- Reputation:
- 10
- Status:
- New User
- Location:
- Last seen:
- 1 month, 4 weeks ago
- Joined:
- 5 months, 2 weeks ago
- Email:
- s*****************@gmail.com
Posts by Jacob
<prev
• 33 results •
page 1 of 4 •
next >
2
votes
0
answers
173
views
0
answers
... I want to find reliable sources that give me the generation time for multiple organisms.
This is the average time in years between a parent and it's offspring for an organism. It can also be the age at which an organism reproduces. ...
written 8 weeks ago by
Jacob • 10
0
votes
1
answer
191
views
1
answers
... clustalw < input.txt
Where input.txt is
1
file.txt
2
9
4
^@
1
^@
^@
^@
X
^@
X
The ^@ is one character, not two. It works as the enter key. You can type it like this
1. vim input.txt
2. i #going into insertion mode within vim
...
written 9 weeks ago by
Jacob • 10
0
votes
0
answers
119
views
0
answers
... I'm running command line tblastx for some human genes as the query sequences against the human genome as the target sequence. Almost all the searches are returning a query cover (qcovhsp) of 33%. I'm thinking that it is no coincidence that amino acids are 3 nucleotides long and that my query covers ...
written 9 weeks ago by
Jacob • 10
0
votes
1
answer
191
views
1
answer
... I am trying to run the command line clustalw, but within a loop.
Because of this I want to be able to set all the parameters at the time of execution, I don't want to change the parameters manually while the program is running
Here is what I am running
clustalw
1. Sequence Input From Disc
...
written 9 weeks ago by
Jacob • 10
3
votes
1
answer
220
views
1
answer
... I'm am using the needle command and would just like there to be no output to the terminal
For example this is what I run
needle -asequence seq1.fna -bsequence seq2.fna -gapopen 0 -gapextend 2 -outfile file.needle
Needleman-Wunsch global alignment of two sequences
And I would jus ...
written 11 weeks ago by
Jacob • 10
• updated
11 weeks ago by
Charles Plessy • 2.2k
0
votes
1
answer
178
views
1
answers
... No just if theres a program that can take in this data and decide the stage, because I'm worried about misclassifying the stage based on my level of understanding. ...
written 3 months ago by
Jacob • 10
0
votes
1
answer
178
views
1
answers
... I don't know what that means, I'm trying make an accurate estimate of tumour stage based on a bunch of other data I have so that I can compare patient data where tumour stage is know to other data where tumour stage is not known ...
written 4 months ago by
Jacob • 10
0
votes
0
answers
159
views
0
answers
... For template_type and template_length, this is all I can really find on them
-template_type
Discontiguous MegaBLAST template type
-template_length
Discontiguous MegaBLAST template length
I don't really know what they are though and I don't know what differences setting op ...
written 4 months ago by
Jacob • 10
0
votes
1
answer
178
views
1
answer
... I'm working with breast cancer data and have lots of patient information regarding the tumour size(in cm), the type of the tumour(invasive ductal carcinoma; invasive lobular carcinoma; inflammatory carcinoma), the presence of lymph node metastasis, age of the patient, etc. For some patients I have i ...
written 4 months ago by
Jacob • 10
• updated
4 months ago by
jmzeng1314 • 20
0
votes
0
answers
145
views
0
answers
... I'm performing blast searches with only exon regions for certain genes against various genomes(for different organisms).
For example, I will blast regions 1..367, 368..444, 445..828 of the gene ACAN(https://www.ncbi.nlm.nih.gov/nuccore/NM_013227.3) against an organisms genome such as
ftp://ftp ...
written 4 months ago by
Jacob • 10
Latest awards to Jacob
No awards yet. Soon to come :-)
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1392 users visited in the last hour