User: l.souza

gravatar for l.souza
l.souza60
Reputation:
60
Status:
Trusted
Location:
Brasilia, Brazil
Last seen:
3 months, 3 weeks ago
Joined:
1 year, 8 months ago
Email:
l***************@outlook.com

Posts by l.souza

<prev • 81 results • page 1 of 9 • next >
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How to divide FASTA file?
... Hello! I have a FASTA file with about 1600 sequences. But, I'm gonna use a tool that requires the FASTA files possess up to 200 sequences. Is there a way to automate the division of this file using Linux or Windows? Thanks in advance. ...
fasta sequences written 12 months ago by l.souza60 • updated 12 months ago by genomax60k
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Comment: C: RSMD in homology modelling protein
... The TM-score is 0.64319. So, according to the reference value, the protein is in about the same fold, right? Visually, they seem to be well imposed, with isolated places not so good (most of them are presented as coil). ...
written 15 months ago by l.souza60
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RSMD in homology modelling protein
... Hello everyone, I am modeling a protein through homology approach. My protein has a large disordered structure (~46% of coil). After the refinement, the RSMD between the template and the final model was 3.68Å. Is it too high? Thanks in advance! ...
protien rsmd homology written 15 months ago by l.souza60 • updated 15 months ago by jrj.healey9.9k
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Comment: C: Why to delete gaps in alignments to phylogeny?
... Thank you, Jean-Karim! Would you say that trimAl is trustworthy? ...
written 17 months ago by l.souza60
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Why to delete gaps in alignments to phylogeny?
... Hello, everybody! I've been reading the chapter 3 of *The Phylogenetic Handbook: A Practical Approach to Phylogenetic Analysis and Hypothesis Testing* by Des Higgins and Philippe Lemey, that talks about multiple sequence alignment to phylogenetic approaches. And the authors suggest deleting gap r ...
phylogeny gaps sequences written 17 months ago by l.souza60 • updated 17 months ago by Jean-Karim Heriche17k
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Comment: C: What is a good tool to make saturation analyses?
... I'm talking about mutation saturation ...
written 17 months ago by l.souza60
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Comment: C: Alingment of ~23 Mb sequences
... I'm gonna try these. They're linear. ...
written 17 months ago by l.souza60
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Comment: C: Alingment of ~23 Mb sequences
... Three whole genome sequences, each one from different species. I've tried to align them all at once. ...
written 17 months ago by l.souza60
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Comment: C: Alingment of ~23 Mb sequences
... I've tried in my personal computer, in a particular server and in CIPRES. Does MUMmer work only for pairwise alignment? ...
written 17 months ago by l.souza60
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Comment: C: Alingment of ~23 Mb sequences
... I edited the post. Now, I think this is enough to understand the problem! ...
written 17 months ago by l.souza60

Latest awards to l.souza

Popular Question 5 months ago, created a question with more than 1,000 views. For Extracting information from a genbank file
Popular Question 5 months ago, created a question with more than 1,000 views. For Software for Tree Visualization
Scholar 18 months ago, created an answer that has been accepted. For A: DNA sequences trimming methods
Rising Star 19 months ago, created 50 posts within first three months of joining.
Scholar 19 months ago, created an answer that has been accepted. For A: DNA sequences trimming methods
Supporter 19 months ago, voted at least 25 times.
Scholar 19 months ago, created an answer that has been accepted. For A: DNA sequences trimming methods
Scholar 19 months ago, created an answer that has been accepted. For A: DNA sequences trimming methods

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