User: l.souza

gravatar for l.souza
l.souza50
Reputation:
50
Status:
Trusted
Location:
Brasilia, Brazil
Last seen:
2 days, 15 hours ago
Joined:
5 months, 1 week ago
Email:
l***************@outlook.com

Posts by l.souza

<prev • 80 results • page 1 of 8 • next >
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Comment: C: RSMD in homology modelling protein
... The TM-score is 0.64319. So, according to the reference value, the protein is in about the same fold, right? Visually, they seem to be well imposed, with isolated places not so good (most of them are presented as coil). ...
written 11 days ago by l.souza50
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RSMD in homology modelling protein
... Hello everyone, I am modeling a protein through homology approach. My protein has a large disordered structure (~46% of coil). After the refinement, the RSMD between the template and the final model was 3.68Å. Is it too high? Thanks in advance! ...
protien rsmd homology written 11 days ago by l.souza50 • updated 11 days ago by jrj.healey2.6k
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Comment: C: Why to delete gaps in alignments to phylogeny?
... Thank you, Jean-Karim! Would you say that trimAl is trustworthy? ...
written 11 weeks ago by l.souza50
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Why to delete gaps in alignments to phylogeny?
... Hello, everybody! I've been reading the chapter 3 of *The Phylogenetic Handbook: A Practical Approach to Phylogenetic Analysis and Hypothesis Testing* by Des Higgins and Philippe Lemey, that talks about multiple sequence alignment to phylogenetic approaches. And the authors suggest deleting gap r ...
phylogeny gaps sequences written 11 weeks ago by l.souza50 • updated 11 weeks ago by Jean-Karim Heriche13k
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Comment: C: What is a good tool to make saturation analyses?
... I'm talking about mutation saturation ...
written 11 weeks ago by l.souza50
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Comment: C: Alingment of ~23 Mb sequences
... I'm gonna try these. They're linear. ...
written 11 weeks ago by l.souza50
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Comment: C: Alingment of ~23 Mb sequences
... Three whole genome sequences, each one from different species. I've tried to align them all at once. ...
written 11 weeks ago by l.souza50
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Comment: C: Alingment of ~23 Mb sequences
... I've tried in my personal computer, in a particular server and in CIPRES. Does MUMmer work only for pairwise alignment? ...
written 11 weeks ago by l.souza50
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Comment: C: Alingment of ~23 Mb sequences
... I edited the post. Now, I think this is enough to understand the problem! ...
written 11 weeks ago by l.souza50
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Alingment of ~23 Mb sequences
... I've tried to make an MSA between three sequences of different species fce rom the same genus, with ~23 million bases, to find motifs related to the virulence of these organisms. I used MAFFT with the fastest algorithm - FFT-NS-1 - but it broke my computer. Then, I tried to run into CIPRES server, ...
alignment written 11 weeks ago by l.souza50

Latest awards to l.souza

Scholar 3 months ago, created an answer that has been accepted. For A: DNA sequences trimming methods
Rising Star 4 months ago, created 50 posts within first three months of joining.
Scholar 4 months ago, created an answer that has been accepted. For A: DNA sequences trimming methods
Supporter 4 months ago, voted at least 25 times.
Scholar 4 months ago, created an answer that has been accepted. For A: DNA sequences trimming methods
Scholar 4 months ago, created an answer that has been accepted. For A: DNA sequences trimming methods

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