User: adeenahassan77

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Posts by adeenahassan77

<prev • 14 results • page 1 of 2 • next >
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Comment: C: sequence input for doing ka/ks analysis
... HI. I'm using ka ks calculator for ka ks ratio. But i'm too confused either it is working for multiple sequence alignment or only for a pair of sequences ???? ...
written 2 days ago by adeenahassan7720
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Comment: C: Error in Calculation of Ka/Ks value using Ka/Ks calculator
... Hi deepakumar, I have the same problem in ka/ks calculator. Do you have any idea how to resolve it ???? ...
written 2 days ago by adeenahassan7720
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Comment: C: Best Practices/Softwares To Calculate Ka/Ks Ratio
... Assalm o alikum everyone, I'm using ka ks calculator for ka ks ratio. But i'm too confused either it is working for multiple sequence or only for a pair of sequences ???? ...
written 10 days ago by adeenahassan7720
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Command or Perl script for concatenating multiple files in a specific order listed in a txt file
... Assalm o alikum everyone! I want to concatenate 100 of FASTA files present in single directory according to a specific order listed in a file by using perl kindly guide me how to do so ??? Is there any command to concatenate files into single file in such a way ??? ...
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Comment: C: How To rename multiple files by removing different extenssion from command line
... Hi, I have 100 folders and in each folder i have multiple files as mention above (Prefix Aardvark change from folder to folder). I'm using above code it works well for Aardvark bt not for other folder in which prefix contains multiple words e.g for `African_savana_elephant` it adds Genes name after ...
written 14 days ago by adeenahassan7720
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Comment: C: How To rename multiple files by removing different extenssion from command line
... first one for ACMSD, Second one for ARID1B, Third one for CRYM, this will be in the same order ...
written 18 days ago by adeenahassan7720
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(Closed) How To rename multiple files by removing different extenssion from command line or with perl script
... I have multiple file like below in linux > Aardvark_GENES_D.fa.1 > Aardvark_GENES_D.fa.2 > Aardvark_GENES_D.fa.3 > Aardvark_GENES_D.fa.4 I want to rename them by removing last extension and editing string like below Aardvark_ACMSD_D.fa Aardvark_ARID1B_D.fa ...
rename files commandline perlscript written 18 days ago by adeenahassan7720 • updated 18 days ago by st.ph.n1.3k
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Comment: C: [share] Script to bulk retrieve DNA sequences by protein IDs from GenBank
... Hello every one I have a list of genes accession number and i want to download corresponding CDS sequence for each from NCBI in fasta format kindly guide me how can i do so ??? I'm new in bioinformatics .. and the following link is daed .. :( Here is the download link: https://drive.google.com/u ...
written 9 weeks ago by adeenahassan7720
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Answer: A: Modifying fasta file based on vcf information
... Hello jautis , I have the same task could you guide me how to do so ?? how u done this ?? i mean how to applies all the variations in a VCF file to the reference genome to create a sample genome ?? i'm new in bioinformatics .. Thanks ...
written 10 weeks ago by adeenahassan7720
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Comment: C: Perl script for extracting different genes information from gff file
... Thank u so much ,, its so helpful previously i even don't know the direction ,,, Actually in the output of this code whole annotation file comes after a small editing it gives genes information in the single file ,, > my $annotationsFn = "GCF_000298275.1_OryAfe1.0_genomic.gff"; my > $results ...
written 11 weeks ago by adeenahassan7720

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