User: adeena_hassan

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Posts by adeena_hassan

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Comment: C: how can find exlusively expressed genes between two genomes
... Thank you for correction and useful information. :) ...
written 20 days ago by adeena_hassan40
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Comment: C: how can find exlusively expressed genes between two genomes
... Thank you :) your suggestion is helpful :) ...
written 20 days ago by adeena_hassan40
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Comment: C: how can find exlusively expressed genes between two genomes
... No, actually i don't have transcriptome sequence. i have two genomes one of them is published genome and other is unpublished genome which i have constructed from BAM file. ...
written 22 days ago by adeena_hassan40
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how can find exlusively present genes between two genomes
... Assalam o alaikum everyone, I have genome sequences of two closely related mammals (carnivores). I want to find genes which are exclusively present between two genomes means present in one genome and absent in other. Is there any tool or perl script to find exclusively expressed genes ?? ...
perl script genome wide comaprison tool written 22 days ago by adeena_hassan40
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Comment: C: how to resolve this 1-bases cordinates confusion
... Yes, you are right i guess problem is in my file format. > actually i have fetched column 4 and 5 from gff3 (annotation) file and > made a bed6 file then i have used bedtools getfasta for getting FASTA > sequence. This is wrong approach. I should have to convert gff to bed then used it ...
written 22 days ago by adeena_hassan40
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Comment: C: how to resolve this 1-bases cordinates confusion
... Thank u so much your answer is helpful. ...
written 22 days ago by adeena_hassan40
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Comment: C: how to resolve this 1-bases cordinates confusion
... FABP5 is not mentioned as pseudogene according to information given in NCBI for dog genome. ...
written 22 days ago by adeena_hassan40
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Comment: C: how to resolve this 1-bases cordinates confusion
... ohhhh sorry 4 that :o above example not from published genome. but i have also tried it for dog genome which is available on NCBI same problem for published genome. ...
written 23 days ago by adeena_hassan40
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Comment: C: how to resolve this 1-bases cordinates confusion
... No, this is not a published genome. ...
written 23 days ago by adeena_hassan40
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Comment: C: how to construct CDS by using annotation file (coordinates) properly ???
... Sorry for this late reply ! i have fetched column 4 and 5 from gff3 (annotation) file and made a bed6 file then i have used bedtools getfasta for getting FASTA sequence. I have downloaded bam file and then generated consensus FASTA from bam file by using samtools. what is the format of my fasta f ...
written 23 days ago by adeena_hassan40

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