User: mustafa_aljadi

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New User
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2 weeks, 2 days ago
Joined:
3 years, 9 months ago
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m*************@yahoo.com

Posts by mustafa_aljadi

<prev • 11 results • page 1 of 2 • next >
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fastq extraction command
... Hi All, I have many fastq.gz files that I want to extract them from one directory to another one. Can you please tell me which linux command I should use? Thank you ...
assembly written 5 weeks ago by mustafa_aljadi10 • updated 5 weeks ago by GenoMax96k
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Comment: A: Pac bio assembler
... I am trying to make an assembly by PAC bio reads of beaver. it's already done by canu but the results weren't good enough. so I am looking for other assemblers that can do the assembly. Also, I am thinking to trim these but I don't know what is a good trimming program for PAC bio reads. Any sugges ...
written 6 weeks ago by mustafa_aljadi10
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6 follow
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Pac bio assembler
... Hi All, I have a PacBio raw data I want to assemble, what is the list of good assembler to assembler available? Thanks ...
assembly written 6 weeks ago by mustafa_aljadi10
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Extract CSV and SAM
... Dear All I used CLC workbench to BLAST after I got my results I wanted to extract the result as CSV or Excel file. But unfortunately every time I extract the BLAST result from CLC workbench the file is empty. Also, this happened when I tried to extract the mapping result as a bam format. Can yo ...
gene clc workbench written 9 months ago by mustafa_aljadi10 • updated 9 months ago by GenoMax96k
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Comment: A: fastq-dump -I --split-files
... Sorry I didn't get this part of your answer Just define number of threads available and the output directory. Put this script in your sra file directory and change permission with chmod u+x script. Can you please verify it to me? Thanks Mustafa ...
written 14 months ago by mustafa_aljadi10
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Comment: A: fastq-dump -I --split-files
... I already download the files from NCBI. To transfer the 75 RNA seq files to CLC program those files need to be split into reverse and forward. I did use this code fastq-dump -I --split-files SRR390728.sra, which is applicable for example for one SRR390728. My question is how can I split the 75 R ...
written 14 months ago by mustafa_aljadi10
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fastq-dump -I --split-files
... Hey All, I am trying to do RNA seq on CLC, but before transfer my data to the program I need to split the reads that I have into forwarding and reverse. There is a program called fastq-dump -I --split-files that does this process. The problem which I have is the 75 RNA seq files has it's own SRR ...
rna-seq written 14 months ago by mustafa_aljadi10 • updated 14 months ago by ATpoint46k
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Comment: A: Assembly of wheat genome
... Thank you so much. I really appreciate your help guys. Mustafa ...
written 2.6 years ago by mustafa_aljadi10
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Comment: A: Assembly of wheat genome
... Thank you so much guys for your help. Mustafa ...
written 2.6 years ago by mustafa_aljadi10
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9 follow
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Assembly of wheat genome
... Hey All, I am working on the DNA assembly of the wheat genome. I used the W2rap assembler, the assembly is done. But I dont know how to determine if my assembly is good or Not? I mean which criteria I should follow? Thanks in advance Mustafa ...
genome written 2.6 years ago by mustafa_aljadi10 • updated 2.6 years ago by shengweima60

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