User: misbahabas

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misbahabas60
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2 years, 1 month ago
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2 years, 8 months ago
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m*********@gmail.com

Posts by misbahabas

<prev • 58 results • page 1 of 6 • next >
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Comment: C: SnpEff html and .vcf file result are not matching
... Thanks kevin , i had solved this problem because some issues was in my vcf ...
written 2.2 years ago by misbahabas60
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Comment: C: HOW EDIT VCF FILE COLUMNS
... I want to annotate variants in cds of gene in two species, I have a only coding sequences. i use snpeff to annotate now i want to convert cds variants position into gnomic coordinates. thats why i want to replace column of position in vcf with genomic coordinates positions. So i need above output ...
written 2.3 years ago by misbahabas60
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(Closed) HOW EDIT VCF FILE COLUMNS
... I want to change position column in vcf files. Please tell me any script or tool which solve the following issues. i am new in programming If i have a vcf file like this pos ref alt 1 C G 2 A T 3 C G 4 T C 5 G C 6 T A 7 T G ...
perl vcf tool snp written 2.3 years ago by misbahabas60 • updated 2.3 years ago by RamRS25k
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Tool for CDS Variants annotation
... Hy, Please there is any tool for CDS variants annotation?? I have cds of 2 genes and want to find synonymous and non-synonymous variants. ...
vcf alignment snp written 2.3 years ago by misbahabas60 • updated 2.3 years ago by Kevin Blighe53k
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Comment: C: Remove Gaps from multiple Alignment
... input HUMAN= **--**ATGC**-**C MOUSE= **AT**GC--**T**- I just a example input, Now i want output like this HUMAN= ATGCC MOUSE= GC--- I want to remove gap columns according to reference not between all the file, here human is reference ...
written 2.3 years ago by misbahabas60 • updated 2.3 years ago by Pierre Lindenbaum125k
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Comment: C: Remove Gaps from multiple Alignment
... sorry it just a example both sequence have same lengths sorry again >1 ------------mfelaeySGLL---TLFL-IASFPIFT-SPIG--- >2 ------------mfelsgyAVLLFFMVIFL-VASFPLLS-SPIG--- >3 --------MKLF-------TFLLFFL-LLC-LSMIPLLS-SPVS--- i want to remove gaps column accor ...
written 2.3 years ago by misbahabas60 • updated 2.3 years ago by Pierre Lindenbaum125k
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Remove Gaps from multiple Alignment
... Asslam u Alikum I want to remove gaps from multiple sequence alignment , i tried many tools and scripts but it works in different ways. H= -----ATGCGTACG-TGCA--C M= ATGCCCGATCGCH----ATC I want to remove gaps according to reference like if gaps is present in first line (reference) remove ...
command alignment sequence written 2.3 years ago by misbahabas60 • updated 2.3 years ago by Joe16k
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How map the gene position to the genomic position.
... hello everyone anyone have idea how map the gene position to the genomic position. Please tell me about it ...
vcf genome sequence tool snp written 2.4 years ago by misbahabas60
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Comment: C: Is there any script or tool to Map gene SNP positions to genome coordinates
... that thread is not usefull for me ...
written 2.4 years ago by misbahabas60
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Is there any script or tool to Map gene SNP positions to genome coordinates
... Is there any script or tool to Map gene SNP positions to genome coordinates, for example CHROM POS ID REF ALT 1 **60** . A T 60 is snp position in genes not chr 1 now i want to find position of **A** in **chr1**, mean genomic posit ...
vcf sequence tool snp script written 2.4 years ago by misbahabas60 • updated 2.4 years ago by Emily_Ensembl20k

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Rising Star 2.4 years ago, created 50 posts within first three months of joining.

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