User: Kian

gravatar for Kian
Kian40
Reputation:
40
Status:
New User
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Last seen:
1 month, 1 week ago
Joined:
3 years, 9 months ago
Email:
a*******@yahoo.com

Posts by Kian

<prev • 46 results • page 1 of 5 • next >
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Comment: C: SNP exon region UCSC
... yes i want only SNP that are in exon region in the genome, i want to get the list from Table Browser in UCSC. ...
written 6 weeks ago by Kian40
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SNP exon region UCSC
... how i can get SNP in only exons regions genome with UCSC? UCSC get the all SNP of gene region, and there is no filter option to get only exon region. tx ...
exon snp ucsc written 6 weeks ago by Kian40 • updated 6 weeks ago by Pierre Lindenbaum134k
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How to delete rows with the same number in the bed file in usegalaxy
... How to delete rows with the same number in the bed file in usegalaxy (If the number of the second column is equal to the number of the third column, delete that row) which tool could be useful? input: chr1 10 20 chr1 10 10 chr1 15 20 chr1 15 30 chr1 30 30 ...
bed row column usegalaxy number written 12 weeks ago by Kian40
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FreeBayes error when limit variant calling to a SNP region
... FreeBayes error when limit variant calling to a SNP region in RNASeq data Input was the BAM file and the dataset of SNP that uploaded from UCSC to usegalaxy. An error occurred with this dataset: ERROR(freebayes): Invalid target region coordinates (chr13 58011599 58011599) right bound is lo ...
rnaseq freebayes varinat calling snp usegalaxy written 12 weeks ago by Kian40 • updated 12 weeks ago by Ram32k
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how to get gff file bos tau8 from ucsc to import in usegalaxy
... how can i get gff file bos tau8 from ucsc to import in usegalaxy? maybe this route: -usegalaxy -get data -UCSC Main table browser -group:?? -output format:?? thanks ...
gff ucsc htseq-count usegalaxy written 22 months ago by Kian40
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(Closed) how to use trimmomatic remove bases from the end of the read
... i want to use trimmomatic tool to remove near 10 bases from the end of the reads in RNAseq? how can i do this? thanks ...
trimmomatic read end rnaseq remove written 22 months ago by Kian40
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(Closed) how to solve the Usegalaxy RNASeq analysis DESeq2 error
... Im trying to use DESeq2 tool but, this error occurred, can anyone tell me whats the problem? and whats the solution? thanks “This job was terminated because it used more memory than it was allocated” ...
rnaseq ngs deseq2 usegalaxy written 23 months ago by Kian40 • updated 22 months ago by Biostar ♦♦ 20
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RNASeq analysis, FastQC how to solve warning and fail
... I do a FastQC for quality control my data but i some situation there are a caution, can anyone tell me how to solve these problems for each situation? Thanks Per base sequence content = FAIL Per sequence GC content = ! Sequence Length Distribution = ! Sequence Duplication Levels = ! ...
rnaseq fastq fastqc ngs duplication written 23 months ago by Kian40
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Comment: C: How to solve error memory R package pedigree
... dim (A)= 13000 RAM 16 gig the post haven't any suggestion for the error. ...
written 2.6 years ago by Kian40
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How to solve error memory R package pedigree
... whats the problem this error and how to solve this in R? library(pedigreemm) A<-getA(A) > A<-as.matrix(A) Error in asMethod(object) : Cholmod error 'problem too large' at file ../Core/cholmod_dense.c, line 105 ...
software error R pedigree memory written 2.6 years ago by Kian40

Latest awards to Kian

Great Question 7 weeks ago, created a question with more than 5,000 views. For How to solve error memory R package pedigree
Great Question 20 months ago, created a question with more than 5,000 views. For How to replace number in R
Popular Question 20 months ago, created a question with more than 1,000 views. For How to extract a sequence of gene from UCSC table browser in specific region
Popular Question 20 months ago, created a question with more than 1,000 views. For How to solve error memory R package pedigree
Popular Question 20 months ago, created a question with more than 1,000 views. For Repeat elements, SINEs, LINEs, LTRs in specific regions of gene
Popular Question 22 months ago, created a question with more than 1,000 views. For Convert Genotype SNP Matrix Into Plink Format, allelic form
Popular Question 23 months ago, created a question with more than 1,000 views. For How to solve error memory R package pedigree
Popular Question 23 months ago, created a question with more than 1,000 views. For How to determine consensus sequence and conservation score for each protein?
Popular Question 2.6 years ago, created a question with more than 1,000 views. For How to extract a sequence of gene from UCSC table browser in specific region
Popular Question 2.6 years ago, created a question with more than 1,000 views. For How to replace number in R

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