User: Kian

gravatar for Kian
Kian40
Reputation:
40
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New User
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Last seen:
2 months ago
Joined:
1 year, 3 months ago
Email:
a*******@yahoo.com

Posts by Kian

<prev • 38 results • page 1 of 4 • next >
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Comment: C: How to solve error memory R package pedigree
... dim (A)= 13000 RAM 16 gig the post haven't any suggestion for the error. ...
written 9 weeks ago by Kian40
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How to solve error memory R package pedigree
... whats the problem this error and how to solve this in R? library(pedigreemm) A<-getA(A) > A<-as.matrix(A) Error in asMethod(object) : Cholmod error 'problem too large' at file ../Core/cholmod_dense.c, line 105 ...
software error R pedigree memory written 9 weeks ago by Kian40
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Comment: C: What value shoould be filled at Choose Adapter Clip adapter sequences Galaxy
... Thanks Dear Ryan, Do you mean "RNA STAR" tool -Gapped-read mapper for RNA-seq data ? its needs the reference genome, as i work on the cow genome there are not this genome on the list. ...
written 3 months ago by Kian40
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What value shoould be filled at Choose Adapter Clip adapter sequences Galaxy
... I have a RNAseq data that i upload to usegalaxy and convert to Fastq format (fastq-dump). then i want to remove adapter sequence. With Clip tool in usegalaxy, there are a filed that should be fill with "Choose Adapter". how i can fill this filed? thanks ...
adapter galaxy clip choose adapter written 3 months ago by Kian40 • updated 3 months ago by Devon Ryan84k
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Comment: C: How to determine consensus sequence and conservation score for each protein?
... I see the CLUSTAL Omega, it can align the sequence the amino acids of the proteins, i should get consensus sequence by common amino acids between 3 sequence? (if 2 amino acid is common alignment, it can be in consensus sequence)? and how i can calculate conservation score? ...
written 4 months ago by Kian40
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Comment: C: How to determine consensus sequence and conservation score for each protein?
... May be yes, i want to comparing amino acid sequences of three protein that i have, and obtain the consensus sequence and generated homology models for these proteins. ...
written 4 months ago by Kian40
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Comment: C: How to determine consensus sequence and conservation score for each protein?
... Thanks for responses, If i have 3 protein sequence, i should align them for consensus sequence? how about conservation score? ...
written 4 months ago by Kian40
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How to determine consensus sequence and conservation score for each protein?
... How i can determine to consensus sequence and conservation score " percent of conservation" for some protein? i have some genes and i want to determine these. i know in CLC and using create alignment can do it but i want another tools for this work. Thanks ...
protein conservation score consensus sequence written 4 months ago by Kian40 • updated 4 months ago by jrj.healey6.8k
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Comment: C: Repeat elements, SINEs, LINEs, LTRs in specific regions of gene
... Thanks Dear Alex, i want to do the analysis in bos taurus8. what i should replace with hg38? ...
written 4 months ago by Kian40
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Comment: C: Reapet elements, SINEs, LINEs, LTRs in specific regions of gene
... Thanks Dear genomax , you mean i first in UCSC, repeat masker track, get bet output format as BED, and then take this file to BEDOPS to get the specific repeat like SINE, LINE ,.. for each region? is it true? ...
written 4 months ago by Kian40

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