User: Kian

gravatar for Kian
Kian40
Reputation:
40
Status:
New User
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Last seen:
1 month ago
Joined:
1 year, 12 months ago
Email:
a*******@yahoo.com

Posts by Kian

<prev • 42 results • page 1 of 5 • next >
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how to get gff file bos tau8 from ucsc to import in usegalaxy
... how can i get gff file bos tau8 from ucsc to import in usegalaxy? maybe this route: -usegalaxy -get data -UCSC Main table browser -group:?? -output format:?? thanks ...
gff ucsc htseq-count usegalaxy written 5 weeks ago by Kian40
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(Closed) how to use trimmomatic remove bases from the end of the read
... i want to use trimmomatic tool to remove near 10 bases from the end of the reads in RNAseq? how can i do this? thanks ...
trimmomatic read end rnaseq remove written 5 weeks ago by Kian40
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(Closed) how to solve the Usegalaxy RNASeq analysis DESeq2 error
... Im trying to use DESeq2 tool but, this error occurred, can anyone tell me whats the problem? and whats the solution? thanks “This job was terminated because it used more memory than it was allocated” ...
rnaseq ngs deseq2 usegalaxy written 6 weeks ago by Kian40 • updated 25 days ago by Biostar ♦♦ 20
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RNASeq analysis, FastQC how to solve warning and fail
... I do a FastQC for quality control my data but i some situation there are a caution, can anyone tell me how to solve these problems for each situation? Thanks Per base sequence content = FAIL Per sequence GC content = ! Sequence Length Distribution = ! Sequence Duplication Levels = ! ...
rnaseq fastq fastqc ngs duplication written 6 weeks ago by Kian40
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Comment: C: How to solve error memory R package pedigree
... dim (A)= 13000 RAM 16 gig the post haven't any suggestion for the error. ...
written 10 months ago by Kian40
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How to solve error memory R package pedigree
... whats the problem this error and how to solve this in R? library(pedigreemm) A<-getA(A) > A<-as.matrix(A) Error in asMethod(object) : Cholmod error 'problem too large' at file ../Core/cholmod_dense.c, line 105 ...
software error R pedigree memory written 10 months ago by Kian40
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Comment: C: What value shoould be filled at Choose Adapter Clip adapter sequences Galaxy
... Thanks Dear Ryan, Do you mean "RNA STAR" tool -Gapped-read mapper for RNA-seq data ? its needs the reference genome, as i work on the cow genome there are not this genome on the list. ...
written 11 months ago by Kian40
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What value shoould be filled at Choose Adapter Clip adapter sequences Galaxy
... I have a RNAseq data that i upload to usegalaxy and convert to Fastq format (fastq-dump). then i want to remove adapter sequence. With Clip tool in usegalaxy, there are a filed that should be fill with "Choose Adapter". how i can fill this filed? thanks ...
adapter galaxy clip choose adapter written 11 months ago by Kian40 • updated 11 months ago by Devon Ryan90k
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Comment: C: How to determine consensus sequence and conservation score for each protein?
... I see the CLUSTAL Omega, it can align the sequence the amino acids of the proteins, i should get consensus sequence by common amino acids between 3 sequence? (if 2 amino acid is common alignment, it can be in consensus sequence)? and how i can calculate conservation score? ...
written 12 months ago by Kian40
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Comment: C: How to determine consensus sequence and conservation score for each protein?
... May be yes, i want to comparing amino acid sequences of three protein that i have, and obtain the consensus sequence and generated homology models for these proteins. ...
written 12 months ago by Kian40

Latest awards to Kian

Popular Question 6 weeks ago, created a question with more than 1,000 views. For How to solve error memory R package pedigree
Popular Question 6 weeks ago, created a question with more than 1,000 views. For How to determine consensus sequence and conservation score for each protein?
Popular Question 10 months ago, created a question with more than 1,000 views. For How to extract a sequence of gene from UCSC table browser in specific region
Popular Question 10 months ago, created a question with more than 1,000 views. For How to replace number in R

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