User: ClkElf

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ClkElf20
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Status:
New User
Location:
Istanbul Technical University, Turkey
Last seen:
4 hours ago
Joined:
1 year, 3 months ago
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e**********@yahoo.com

Posts by ClkElf

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Comment: C: Identifying de novo variants in a WGS Trio.vcf file
... So basically you mean that I should filter 0/1 or 1/1 in child, 0/0 for both parents. I also applied [the Genotype Refinement Workflow of GATK][1] on the .vcf file and the output vcf file consists of only 0/1 or 1/1 for child and hom ref for both parents as expected. But what should I do for other p ...
written 3 days ago by ClkElf20
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Identifying de novo variants in a WGS Trio.vcf file
... Hello all, I am a beginner in this field and trying to reveal *de novo* variants in a trio vcf file (Parents-unaffected, child-affected). First, I used PhaseByTransmission tool and then formed a new .vcf file consisting of only unphased variants ("/" instead of "|"). To my knowledge, *de novo* vari ...
de novo gatk vcf unphased multisample written 3 days ago by ClkElf20
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Paternity Testing from WGS Trio
... Hello all, I am a newbie in bioinformatics and would like to process a Trio (Parents and Index) in order to understand the concept. Here is my question: How can I analyse a WGS Trio in order to conduct paternity testing? Or is it possible to do this? The question may sound stupid but I am very cur ...
trio wgs dna-seq paternity test written 10 days ago by ClkElf20 • updated 9 days ago by RamRS17k

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