User: ClkElf

gravatar for ClkElf
ClkElf20
Reputation:
20
Status:
New User
Location:
Istanbul Technical University, Turkey
Last seen:
1 day, 9 hours ago
Joined:
1 year, 5 months ago
Email:
e**********@yahoo.com

Former Bioengineer, newbie in Bioinformatics.

Posts by ClkElf

<prev • 4 results • page 1 of 1 • next >
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Forum: Help cry of a M.Sc. student, who is seeking a path in Bioinformatics
... Hello everyone, I know most of you guys/gals are well-experienced in bioinformatics field, this is why I thought that taking advice from here is the best thing all I can do now. I am going to finish my M.Sc. in Molecular Biology & Genetics program next month. My thesis is about mutational profi ...
bioinformatics forum phd written 1 day ago by ClkElf20 • updated 1 day ago by Vijay Lakhujani3.2k
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Comment: C: Identifying de novo variants in a WGS Trio.vcf file
... So basically you mean that I should filter 0/1 or 1/1 in child, 0/0 for both parents. I also applied [the Genotype Refinement Workflow of GATK][1] on the .vcf file and the output vcf file consists of only 0/1 or 1/1 for child and hom ref for both parents as expected. But what should I do for other p ...
written 8 weeks ago by ClkElf20
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Identifying de novo variants in a WGS Trio.vcf file
... Hello all, I am a beginner in this field and trying to reveal *de novo* variants in a trio vcf file (Parents-unaffected, child-affected). First, I used PhaseByTransmission tool and then formed a new .vcf file consisting of only unphased variants ("/" instead of "|"). To my knowledge, *de novo* vari ...
de novo gatk vcf unphased multisample written 8 weeks ago by ClkElf20
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Paternity Testing from WGS Trio
... Hello all, I am a newbie in bioinformatics and would like to process a Trio (Parents and Index) in order to understand the concept. Here is my question: How can I analyse a WGS Trio in order to conduct paternity testing? Or is it possible to do this? The question may sound stupid but I am very cur ...
trio wgs dna-seq paternity test written 8 weeks ago by ClkElf20 • updated 8 weeks ago by RamRS19k

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