User: deepti1rao

gravatar for deepti1rao
deepti1rao0
Reputation:
0
Status:
New User
Last seen:
4 days, 21 hours ago
Joined:
6 months, 2 weeks ago
Email:
d*********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by deepti1rao

<prev • 40 results • page 1 of 4 • next >
0
votes
1
answer
138
views
1
answers
Comment: C: bbduk for pre-processing
... Why have I lost bases with quality scores 20-32 as you can see in the uploaded pictures? How big is that window which is considered while looking for the avg quality? ...
written 17 days ago by deepti1rao0
0
votes
1
answer
115
views
1
answers
Comment: C: Insert size provided by bbmerge
... So there's an overlap of 50 bp between the mates. ...
written 17 days ago by deepti1rao0
0
votes
1
answer
115
views
1
answers
Comment: C: Insert size provided by bbmerge
... I went through this Sej.I want to know how I can have such small insert sizes if I have reads which are 150 each. ...
written 19 days ago by deepti1rao0
0
votes
1
answer
115
views
1
answer
Insert size provided by bbmerge
... My illumina paired end reads are 150 bases long. I ran bbmerge to check the insert size. Following is the link for the screen shot. https://ibb.co/gpySf6 How can I have an avg insert size of 243 and a maximum of 291 when my reads themselves are 300 (2*150)? Does insert size here mean the inner d ...
bbmerge insert written 19 days ago by deepti1rao0 • updated 19 days ago by genomax39k
0
votes
1
answer
138
views
1
answers
Comment: A: bbduk for pre-processing
... Links for raw and trimmed reads fastqc report: https://ibb.co/kTMAHm https://ibb.co/jwcsxm ...
written 19 days ago by deepti1rao0
0
votes
1
answer
138
views
1
answer
bbduk for pre-processing
... Please look at my raw and pre-processed reads. Pre-processing was done with bbduk. Parameters were as follows: qtrim=r trimq=20 Why is it trimming so severely for min Q 20? Can I change something? ...
reads pre-processing bbduk bbmap written 19 days ago by deepti1rao0 • updated 19 days ago by genomax39k
0
votes
2
answers
145
views
2
answers
Comment: A: Trimming reads with prinseq
... My reads are 150 bases long. Chan, do you suggest 6 as the sliding window? How does one decide? ...
written 21 days ago by deepti1rao0
0
votes
2
answers
145
views
2
answers
Comment: A: Trimming reads with prinseq
... [Reverse reads][1] [1]: https://ibb.co/ivw6Nm ...
written 21 days ago by deepti1rao0 • updated 21 days ago by genomax39k
0
votes
2
answers
145
views
2
answers
Comment: A: Trimming reads with prinseq
... [Forward reads][1] [1]: https://ibb.co/cB61oR ...
written 21 days ago by deepti1rao0 • updated 21 days ago by genomax39k
0
votes
2
answers
145
views
2
answers
Comment: A: Trimming reads with prinseq
... ![enter image description here][1] [1]: http:///home/priyanka/Documents/Deepti/Fastq_Reads/E/E1_fastqc/Images//home/priyanka/Documents/Deepti/Fastq_Reads/E/E1_fastqc/Images/per_base_quality.png ...
written 21 days ago by deepti1rao0

Latest awards to deepti1rao

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 985 users visited in the last hour