User: bcontreras

gravatar for bcontreras
bcontreras0
Reputation:
0
Status:
New User
Last seen:
3 weeks, 6 days ago
Joined:
3 years ago
Email:
b*********@eead.csic.es

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by bcontreras

<prev • 3 results • page 1 of 1 • next >
0
votes
2
answers
2.0k
views
2
answers
Answer: A: lowercase fasta coordinates to GFF
... You can do this in Perl in two steps: 1) convert your FASTA file to 1 sequence per line: perl -lne 'if(/^(>.*)/){ $head=$1 } else { $fa{$head} .= $_ } END{ foreach $s (sort(keys(%fa))){ print "$s\n$fa{$s}\n" }}' infile.fasta > infile.1line.fasta 2) extract lower-case segments from that ...
written 27 days ago by bcontreras0 • updated 27 days ago by genomax85k
0
votes
1
answer
1.7k
views
1
answers
Answer: A: Has anyone used GET_HOMOLOGUES
... Hi Sujai, I'm Bruno Contreras, one of the authors. If you're still there, the main advantage is that you can use and combine 3 different clustering algorithms and the perform several downstream analyses, as explained in the manual and tutorial at https://github.com/eead-csic-compbio/get_homologues ...
written 3.1 years ago by bcontreras0
0
votes
1
answer
1.0k
views
1
answers
Answer: A: get_homologues how remove a genome from future runs
... Hi Dani, option -I allows you to pass a list of genomes/proteomes to be analyzed which must be a subset of those in the input folder. You should this option for your purpose, instead of removing the original input file, since that breaks the internal renaming of sequences as integers. Hope this hel ...
written 3.1 years ago by bcontreras0

Latest awards to bcontreras

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1460 users visited in the last hour