User: plat

gravatar for plat
plat40
Reputation:
40
Status:
New User
Location:
Barcelona
Last seen:
7 months ago
Joined:
1 year, 2 months ago
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p***********@gmail.com

Posts by plat

<prev • 4 results • page 1 of 1 • next >
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Answer: A: How to analyze the num of protein-protein interactions (nodes/edges) of specific
... If I understand correctly your question, you can use the multiple proteins input tool from [stringDB][1]. [1]: https://string-db.org/cgi/input.pl?UserId=input_page_active_form=multiple_identifiers ...
written 7 months ago by plat40
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Answer: A: Sequence length distribution after adapter trimming
... I am not used to bbduk but I think if you cut the adaptors the length should not be the same. Some reads would be cut by for instance, 5 nucleotides, others 10, and others not cut at all. This is why the length distribution should not be the same. ...
written 10 months ago by plat40
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Answer: A: Help! How to plot RNASeq data in PCA
... I would recommend you to input your raw counts into DESeq2, run the pipeline, convert normalized reads to rlog (regularized log transformed reads) and then just run the plotPCA function from DESeq2. It is very easy if you are familiarized with the program. # Creating deseq2 object dds &l ...
written 11 months ago by plat40
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Comment: C: Blast vs. MSA for finding out conserved nucleotides in a sequence
... I think conservation depends on the species (or strains) you are looking for (e.g conserved from yeast to human). For that you have to set sequences from different species/strains that make sense (in the yeast example, for instance, yeast, fly, mouse and human) and construct a MSA with these sequenc ...
written 13 months ago by plat40

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Supporter 11 months ago, voted at least 25 times.

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