User: anicet.ebou

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anicet.ebou160
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Posts by anicet.ebou

<prev • 26 results • page 1 of 3 • next >
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Are primers present by default in reads file obtained form EMP protocol?
... Hello, I am wondering if the reads obtained following the [Earth Microbiome Project for 16S sequencing](http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/16s/) protocol comes with primers already removed or not? ...
16s written 5 days ago by anicet.ebou160
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Comment: C: Raw reads from Ion Torrent. Is it single-end reads or paired-end reads.
... Yes, if the filename format is like FILENAME_XXX.fastq then I'm almost sure that it is a single-end reads file. ...
written 4 weeks ago by anicet.ebou160
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Comment: C: error in installation of TRinity by conda
... Do your internet connection use a proxy? ...
written 4 weeks ago by anicet.ebou160
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Answer: C: Raw reads from Ion Torrent. Is it single-end reads or paired-end reads.
... Generally, if the reads are paired-end data, the filename should be something like FILENAME_XXX_R1.fastq and FILENAME_XXX_R2.fastq and otherwise, for single-end, it should be something like FILENAME_XXX.fastq. Do the name of your file is formated in such a way? ...
written 4 weeks ago by anicet.ebou160
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Comment: C: Fastq-dump does not work
... Please can you add the command you try to execute ? ...
written 4 weeks ago by anicet.ebou160
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Comment: C: Is there a BlastKOALA local installation?
... Ok I forward you a software recommendation but I didn't use it by myself: MEGAN6, Microbiome analysis using a single application. http://ab.inf.uni-tuebingen.de/software/megan6/. Hope It will help you. ...
written 9 months ago by anicet.ebou160
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Answer: A: Is there a BlastKOALA local installation?
... I don't know a way to have BlastKOALA installed locally. But I know another way to have KO annotation: KAAS automatic server [here][1]. And KAAS have a standalone version for Linux and Mac OS available at [here][2]. [1]: https://www.genome.jp/tools/kaas/ [2]: ftp://ftp.kuicr.kyoto-u.ac.jp/mori ...
written 10 months ago by anicet.ebou160
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Comment: C: Extraction of aligned read using samtools
... I think this answer can help you figure out how to do the job. https://www.biostars.org/p/232945/ ...
written 10 months ago by anicet.ebou160
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Answer: A: split text file in multiples text files
... With a one-line bash script: `awk -v RS= '{print > ("output-" NR ".txt")}' file_name` ...
written 18 months ago by anicet.ebou160
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Comment: C: How to statistically compare multiple cell lines
... Do you think doing an analysis of variance ? or a multivariate analysis ? ...
written 20 months ago by anicet.ebou160

Latest awards to anicet.ebou

Popular Question 9 months ago, created a question with more than 1,000 views. For Script to run blast locally with multiple files in a directory as queries
Popular Question 21 months ago, created a question with more than 1,000 views. For Script to run blast locally with multiple files in a directory as queries
Appreciated 23 months ago, created a post with more than 5 votes. For Announcing bioSyntax: Syntax highlighting for biological files
Teacher 2.0 years ago, created an answer with at least 3 up-votes. For A: Recommendations of Linux distros for beginners in bioinformatics

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