User: anicet.ebou

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anicet.ebou100
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Posts by anicet.ebou

<prev • 15 results • page 1 of 2 • next >
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Answer: A: How Can I get a list of sequences in fasta format from the Blast output hits?
... Another method: 1. Use option `-outfmt 5` in BLAST+ suite command line. This will give you a xml file as output. 2. Use this little python script to parse rapidly data. import re output = open('file.out','w') n = 0 print >> output, 'protein'+'\t'+'h ...
written 3 days ago by anicet.ebou100
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Comment: C: Announcing bioSyntax: Syntax highlighting for biological files
... Fix the issue by changing https by http. Thanks everybody. ...
written 17 days ago by anicet.ebou100
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News: Announcing bioSyntax: Syntax highlighting for biological files
... The objective of bioSyntax is to bring you closer to your data, giving you an intuitive & empathetic understanding of biology. bioSyntax integrates seamlessly with vim, less, gedit, & sublime to automatically recognize your favorite biological file formats. For more informations please visi ...
bioinformatics news computational biology written 19 days ago by anicet.ebou100
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Comment: C: Best Clustering Algorithms for Mutation Data?
... Please include sample data and What do you expect the result to be and what was you result when you launch your analysis? With that answer we can improve your analysis. ...
written 6 weeks ago by anicet.ebou100
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Comment: C: R x commercial softwares for microarray analyzes
... If i clearly understand your question you want to use the LIMMA package to perform ANOVA in your microarray analysis? ...
written 6 weeks ago by anicet.ebou100
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Answer: A: How To Become A (Protein) Bioinformatician? - Skills
... 1. Firstly you should learn [Python][1], [Perl][2], [Bioperl][3] and [Biopython][4] and [R/Bioconductor][7]. 2. Bioinformaticians don't like to work on windows even if you install Cygwin. So you absolutely need a linux distros and i strongly recommend [Ubuntu][5] because of the community. So when a ...
written 6 weeks ago by anicet.ebou100
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Answer: A: Recommendations of Linux distros for beginners in bioinformatics
... Ubuntu. Because of the community and all the ressources available it will be more easy for your student to get in touch. When i was on my first project (Transcriptomics to predict toxins peptide-like components in venom gland of a spider), the community help me a lot to master in few days basics ...
written 6 weeks ago by anicet.ebou100
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Using Perl script including R script to retrive Go annotations for list of accesion number
... Hi everyone, I have wrote a perl script to retrieve Go annotations (Molecular Function especially with go id). To retrieve go annotation i use a chunck from R that can do this in few lines, and use Perl to format the output. But it's not working. I have got this error: Global symbol "$lin ...
perl R gene ontology written 5 months ago by anicet.ebou100 • updated 5 months ago by EagleEye4.9k
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Comment: A: Perl script to retrieve species name from Swissprot
... #!/usr/bin/perl use strict; use warnings; use Bio::Seq; use Bio::DB::SwissProt; use SWISS::Entry; print "Please enter the accession number ... "; $_ = ; my $db_obj = Bio::DB::SwissProt->new; my $seq_obj = $db_obj->get_ ...
written 6 months ago by anicet.ebou100 • updated 6 months ago by WouterDeCoster25k
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Perl script to retrieve species name from Swissprot
... I want to query uniprot/KB by accesion number to retrieve species names only.I have write this script: `#!/usr/bin/perl` `use strict; use warnings; use Bio::Seq; use Bio::DB::SwissProt; use SWISS::Entry;` `print "Please enter the accession number ... "; $_ = ; my $db_obj = Bio: ...
swissprot bioperl written 6 months ago by anicet.ebou100 • updated 6 months ago by Elisabeth Gasteiger1.3k

Latest awards to anicet.ebou

Appreciated 17 days ago, created a post with more than 5 votes. For Announcing bioSyntax: Syntax highlighting for biological files
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: Recommendations of Linux distros for beginners in bioinformatics

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