User: Shuixia100

gravatar for Shuixia100
Shuixia100100
Reputation:
100
Status:
New User
Location:
HK
Last seen:
4 years ago
Joined:
6 years, 1 month ago
Email:
s*********@gmail.com

PhD candidate of Environmental Engineering Im mainly interested in the community structure and related enzyme systems in the environmental samples. Ive learnt to analysis data of metagenomics :P

Posts by Shuixia100

<prev • 15 results • page 1 of 2 • next >
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Comment: C: Genome Wide Cog Assignment
... I think you could use online CD-search tool at http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi and select search COGs to get COGs annotation of your genome ...
written 5.6 years ago by Shuixia100100
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Comment: C: Height Of The Hcluster Dendrogram In R
... Not working, I thought hang is to control the height between label and the tree but not the height of the Dendrogram ...
written 5.7 years ago by Shuixia100100
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Height Of The Hcluster Dendrogram In R
... Hi there, when I tried to do hcluster in R While I am expecting some dissimilarity value of 0 to 1 in the height, I got a Dendrogram like below! Could any one help explain the height in the dendrogram. And how could i get dissimilarity value of 0 to 1 in hcluster of R THX in advance, Kylie ...
R written 5.7 years ago by Shuixia100100 • updated 10 days ago by Biostar ♦♦ 20
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Comment: C: Scripts Calculate Tetranuclear Frequency
... sorry dont notice the update THX ...
written 5.7 years ago by Shuixia100100
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Comment: C: Scripts Calculate Tetranuclear Frequency
... Then what would be the scripts, plus do you have some documentation for beginers to seqinr? ...
written 5.7 years ago by Shuixia100100
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Scripts Calculate Tetranuclear Frequency
... Hi there, Does anyone as a scripts for tetranucleotide frequency calculation? I have tried to use the BioStrings in Bioconductor but Im looking for something that could calculate the tetranucleotide frequency from both forward and reverse trands simultaneously and input into ESOM Tools for binning ...
written 5.7 years ago by Shuixia100100 • updated 4.8 years ago by Biostar ♦♦ 20
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(Closed) How To Download The Ko Number In A Specific Pathway Of Kegg
... Hi there, Just like the title said. Does any one know where shall I download it. I cannot find any download link in KEGG server. Many thanks Kylie ...
kegg written 5.8 years ago by Shuixia100100
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How To Blast Kegg-Only Data In The 'Nr' Database
... Hi there, I dont have a locally KEGG database bought,but I want to Blast my sequences against only the KEGG part of nr db cause you know blast whole nr is really time consuming. Here is my approach: download the KO number of a specific pathway that I'm interested in from the KEGG server convert ...
kegg blast identifiers written 5.8 years ago by Shuixia100100 • updated 4.4 years ago by jackuser1979850
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Comment: C: Jellyfish - Fast, Parallel K-Mer Counting For Dna
... Hi Istvan, Im trying to use JellyFish to calculater 4-mer usage in my assembled contigs to get a table of tetranucleotide freq. Im using command line of : jellyfish count -o aftercut.cotig -m 4 -t 2 -s 100000 --both-strands Contigs.fasta but all I got is a list of warning of 'Warn: Bad character i ...
written 5.8 years ago by Shuixia100100
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Comment: C: How To Bin Metagenomic Assembled Contigs Using Tetranucleotide Frequency
... Thanks for your quick reply, could you provide some link of documentation or specifically which command I should use for tetranucleotide freq calculation. THX ...
written 5.9 years ago by Shuixia100100

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Popular Question 4.1 years ago, created a question with more than 1,000 views. For How To Bin Metagenomic Assembled Contigs Using Tetranucleotide Frequency
Popular Question 4.1 years ago, created a question with more than 1,000 views. For Mothur Analyzing 16S Of Ngs High Through-Put Sequencing
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