User: hadasa

gravatar for hadasa
hadasa1.0k
Reputation:
1,030
Status:
Trusted
Location:
Last seen:
4 years, 1 month ago
Joined:
8 years, 1 month ago
Email:
h**********@gmail.com

Posts by hadasa

<prev • 47 results • page 1 of 5 • next >
2
votes
3
answers
1.6k
views
5 follow
3
answers
Looking For Tools That Support Visual Comparisons Of Trace Files
... What tools are available for visualising trace files in such a way that I can compare traces between a forward and a reverse read or subtract traces to see the differences. ...
assembly written 5.4 years ago by hadasa1.0k • updated 4.7 years ago by Charles Warden5.0k
0
votes
1
answer
2.9k
views
1
answers
Comment: C: Cap3 Assembly
... Yes the quality files were specified as outlined in the manual. ...
written 5.5 years ago by hadasa1.0k
0
votes
1
answer
2.9k
views
1
answer
Cap3 Assembly
... Does CAP3 always allocate a Q20 score to all the bases in the final assembled contig when assembling a forward and a reverse read whose original base quality scores were high( above 20)? or I am missing something? ...
assembly written 5.5 years ago by hadasa1.0k • updated 5.5 years ago by Ying W3.8k
6
votes
1
answer
1.9k
views
1
answer
Calculating Average Read Quality
... I would like to calculate the accuracy of 454 reads. I have taken an approach that involves summing the quality scores for each read and dividing by the length of the read. This will obscure regions that may have low or high quality scores.( at the moment It might not matter) Is this a good approac ...
read quality 454 sequencing written 5.8 years ago by hadasa1.0k • updated 5.8 years ago by Arun2.2k
0
votes
2
answers
4.8k
views
2
answers
Comment: C: Using Ruby To Convert Csv File To Fasta
... Hi Rob, I will add this solution to the original blog post.Thanks! ...
written 6.6 years ago by hadasa1.0k
0
votes
2
answers
4.8k
views
2
answers
Comment: C: Using Ruby To Convert Csv File To Fasta
... Thanks Neil for explaining the code! :) ...
written 6.6 years ago by hadasa1.0k
6
votes
2
answers
14k
views
2
answers
Answer: A: How To Download Full Genome Sequence
... Different genomes have been sequenced by different institutes with different motivations and interests. As such there is no single site where you can find all the genome information that you may want. Thus said the NCBI is a good place to start as they curate GenBank database whose contents get mir ...
written 6.9 years ago by hadasa1.0k
3
votes
2
answers
4.8k
views
2
answers
Answer: A: Position Weight Matrix From Sequence Alignment
... Have a look at the BioStrings package in R. It is part of the Bioconductor. To install source("http://www.bioconductor.org/biocLite.R" biocLite("Biostrings") ...
written 7.0 years ago by hadasa1.0k
4
votes
7
answers
1.5k
views
7
answers
Answer: A: Webserver Applications And E-Mail Delivery Of Results
... I prefer if the server offers a download option rather than send the results by email. Most often, the emailed results are a pain to parse unless they are delivered through a standard format (csv,GFF etc). Unless otherwise, I also don't find it very useful to send analysis plots via email. Provide R ...
written 7.0 years ago by hadasa1.0k
0
votes
3
answers
1.7k
views
3
answers
Comment: C: Bioinformatics Ninja Or Samurai Or Rock-Star
... Thanks you understood my question, The idea is not to promote the so called ninjas' it just that i have read lots of argurments for and against such terms or approaches. ...
written 7.0 years ago by hadasa1.0k

Latest awards to hadasa

Supporter 4.1 years ago, voted at least 25 times.
Teacher 6.9 years ago, created an answer with at least 3 up-votes. For A: How To Download Full Genome Sequence
Appreciated 6.9 years ago, created a post with more than 5 votes. For A: How To Download Full Genome Sequence
Teacher 7.0 years ago, created an answer with at least 3 up-votes. For A: Position Weight Matrix From Sequence Alignment
Teacher 7.0 years ago, created an answer with at least 3 up-votes. For A: Webserver Applications And E-Mail Delivery Of Results
Teacher 7.1 years ago, created an answer with at least 3 up-votes. For A: What Are The Most Common Stupid Mistakes In Bioinformatics?
Appreciated 7.1 years ago, created a post with more than 5 votes. For A: What Are The Most Common Stupid Mistakes In Bioinformatics?
Teacher 7.1 years ago, created an answer with at least 3 up-votes. For A: Heatmap Visualisations?
Appreciated 7.1 years ago, created a post with more than 5 votes. For A: Nobel Prize And Bioinformatics
Teacher 7.1 years ago, created an answer with at least 3 up-votes. For A: Nobel Prize And Bioinformatics
Good Answer 7.1 years ago, created an answer that was upvoted at least 5 times. For A: Nobel Prize And Bioinformatics
Student 7.2 years ago, asked a question with at least 3 up-votes. For Regular Expression To Match A Codon Pattern
Popular Question 7.4 years ago, created a question with more than 1,000 views. For Entropy From A Multiple Sequence Alignment With Gaps
Student 7.4 years ago, asked a question with at least 3 up-votes. For Entropy From A Multiple Sequence Alignment With Gaps
Teacher 7.8 years ago, created an answer with at least 3 up-votes. For A: What Is Epitope Mapping?
Student 7.9 years ago, asked a question with at least 3 up-votes. For Visualizing Differences Between A Lot Of Sequences
Popular Question 7.9 years ago, created a question with more than 1,000 views. For Visualizing Differences Between A Lot Of Sequences
Student 8.0 years ago, asked a question with at least 3 up-votes. For What Are Some Good Free Bioinformatics And Computational Biology Books?
Popular Question 8.0 years ago, created a question with more than 1,000 views. For What Are Some Good Free Bioinformatics And Computational Biology Books?
Appreciated 8.0 years ago, created a post with more than 5 votes. For What Are Some Good Free Bioinformatics And Computational Biology Books?
Good Question 8.0 years ago, asked a question that was upvoted at least 5 times. For What Are Some Good Free Bioinformatics And Computational Biology Books?
Teacher 8.0 years ago, created an answer with at least 3 up-votes. For A: Online Bioinformatics Resources
Teacher 8.0 years ago, created an answer with at least 3 up-votes. For A: How To Compute Dn/Ds Ratio And Get Descriptive Statistics On Thousands Of Sequen
Student 8.0 years ago, asked a question with at least 3 up-votes. For Using Phrap Assembly For Recombinining Sequences
Popular Question 8.1 years ago, created a question with more than 1,000 views. For Custom Matrices With Ncbi Blast

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1102 users visited in the last hour