User: theoharis

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theoharis0
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Posts by theoharis

<prev • 8 results • page 1 of 1 • next >
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Answer: C: disease definition ontology
... found this: https://github.com/obophenotype/human-phenotype-ontology/blob/master/hp.obo which is what I was looking for ...
written 15 months ago by theoharis0
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disease definition ontology
... Hi I'm looking for a database where I can look up a definition for a disease term, eg term: "anxiety" definition: "Intense feelings of nervousness, tenseness, or panic, often in reaction to interpersonal stresses; worry about the negative effects of past unpleasant experiences and future negative ...
ontology written 15 months ago by theoharis0
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db with effect of SNP on gene or regulatory region
... Im looking for a database where a SNPs effect on the gene or regulatory region its in is stated. For example if its in a protein encoding gene then the effect on, e.g. enzyme (reduced catalytic activity) or receptor (reduced binding of cognate ligands). Is there such a database? I've looked at regul ...
gene snp written 22 months ago by theoharis0
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Comment: C: obtain selected elements from refseq using awk and regex
... the question was about using awk and refseqgene file format :) ...
written 22 months ago by theoharis0
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obtain selected elements from refseq using awk and regex
... Supposing we have a text file such as the one by refseqgene (see example below). What is a suitable awk program (and regex) to create a new file with 4 columns - gene, synonym, note, summary: > gene="AP3B2" > gene_synonym="EIEE48; NAPTB" > note="adaptor ...
awk refseq regex written 22 months ago by theoharis0
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Comment: C: refseq/description/comments summary field download
... is there a script you can suggest? ...
written 2.1 years ago by theoharis0
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Answer: A: refseq/description/comments summary field download
... elegant, thank you (for mac users this is what I had to do to get **wget** - install brew ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)" - install wget brew install wget --with-libressl ...
written 2.1 years ago by theoharis0
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refseq/description/comments summary field download
... Hi At ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/RefSeqGene/ there are 22 files REFSEQGENE.N.GENOMIC.GBTF (where N is 1 to 22) which contain the refseq comments, i.e. LOCUS NG_054889 120855 bp DNA linear PRI 13-JUN-2017 DEFINITION Homo sapiens cytoplasmic FMR1 int ...
gene genome written 2.1 years ago by theoharis0

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Scholar 15 months ago, created an answer that has been accepted. For C: disease definition ontology

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