User: hubenxia123

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Posts by hubenxia123

<prev • 28 results • page 1 of 3 • next >
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Comment: C: Get MACs2 peaks associated with specific genes
... for homer: you just provide the coordinates of peaks. for MEME, you should extract fasta sequences with customer script or bedtools. for proximal targets: actually, you should use H3K27ac and H3K4me3, or other histone modification markers ChIP-seq data to define potential promoter and enhancers, or ...
written 20 days ago by hubenxia1230
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Comment: C: co-expression analysis from a scRNA-seq data
... if I know how to do that, I wouldn't ask this question. ...
written 10 weeks ago by hubenxia1230
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co-expression analysis from a scRNA-seq data
... I have downloaded a public expression matrix for a scRNA-seq. Does anyone know how to perform Gene-Gene Co-expression, like this paper Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain. Best, ...
rna-seq written 10 weeks ago by hubenxia1230 • updated 10 weeks ago by Kevin Blighe53k
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(Closed) which data distribution uses what statistic test
... Hi, I am a freshman for statistics. I know that one, two or multiple dataset is normal distribution, then I can use to z test, t test or ABOVE to test the difference between samples. But my question is that if two datasets are binomial or negative binomial or bossion distribution, how can I use wh ...
R written 11 weeks ago by hubenxia1230
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Comment: C: how to compare statistics differences for APA
... oh. thanks. I just want to know which one statistic method, such as Fisher's exact test, can analyze the statistic differences for APA. ...
written 12 weeks ago by hubenxia1230
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how to compare statistics differences for APA
... I have two RNAseq data, including case and control. I want to analyze alternative polyadenylation between those groups. I find that there are several programs doing that. my question is how to detect alterations of APA with Fisher's exact test. ...
rna-seq written 12 weeks ago by hubenxia1230 • updated 6 weeks ago by Biostar ♦♦ 20
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Comment: C: how to compare the difference of read counts in a given region
... thanks a lot. could you send the titles for both papers. As I can not open the above links. ...
written 12 weeks ago by hubenxia1230
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how to compare the difference of read counts in a given region
... I have 2 Chipseq, including IP and input samples. for example, the the number of reads in the chr1:1-500bp is 1000 and 50 in IP and input samples, respectively. I want to compare the statistic differences for that. Does anyone know how to work on that? thanks in advance. ...
chip-seq written 12 weeks ago by hubenxia1230 • updated 12 weeks ago by seidel6.9k
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Comment: C: how to analyze scRNA-seq from treatment and control
... yes. I want to compare the difference between groups ...
written 12 weeks ago by hubenxia1230
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Comment: C: how to analyze scRNA-seq from treatment and control
... do I need to merge expression matrix from each group before clustering? ...
written 12 weeks ago by hubenxia1230

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