User: kkam214

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kkam2140
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Posts by kkam214

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Comment: C: Is there a way to plot the data of the microarray color-coded using some data su
... I first learned the concept of 'pseudo-time', I will consult with a co-worker to see if I can write something new in that direction. Thanks ...
written 20 months ago by kkam2140
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Comment: C: Is there a way to plot the data of the microarray color-coded using some data su
... I'm sorry. I did not write any information to tell. I am now working on time series data, and I thought that dimensionally reducing the matrix in the time series direction could be used as approximation of the expression tendency of the whole gene. But I don't think it's the right way to use GO ter ...
written 22 months ago by kkam2140
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Is there a way to plot the data of the microarray color-coded using some data such as GO term?
... I am trying to plot microarray data on 2D plane by PCA and t-SNE now. So, I'd like to colorize each function of each gene, but is there any good way? Multiple GO terms are allocated to each gene, and using a detailed GO term requires tens of thousands of colors for color coding. If possible, I ...
go term R microarray plot written 22 months ago by kkam2140
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Is there a way to convert directly from Solyc ID to Affymetrix Probe ID?
... I was given 30 gene names that started with "Solyc", and said to look for these genes from the dataset of the expression levels that I have. But this data set was taken using Affymetrix DNA microarray system, so Solyc ID is not listed. I've searched about Sol Genomics Network, But I don't have any c ...
gene solyc convert affymetrix written 3.0 years ago by kkam2140

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