User: 110300553

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1103005530
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Converting genotypes to allele frequencies
... I have a table of genotpyes (AA, GG, CT etc.) per sample and their corresponding rsids. I don't have any other corresponding files, just this .txt table, is there a way for me to batch convert these to allele counts in R(0,1,2)? I've found a lot of people doing this individually by SNP but I have ...
genome R snp written 6 months ago by 1103005530 • updated 6 months ago by JC8.2k
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Comment: C: How to download SRA fastq filese
... Thank you so much! ...
written 2.1 years ago by 1103005530
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How to download SRA fastq filese
... I've generated a csv file with the run info for a bioproject SRA using the command: wget 'http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?save=efetch&rettype=runinfo&db=sra&term=PRJNA223640' -O - | tee SraRunInfo.csv Which I found in this answer https://www.biostars.org/p/160576/#26124 ...
sra command line written 2.1 years ago by 1103005530 • updated 2.1 years ago by Pierre Lindenbaum122k
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Comment: C: download all samples from a study in BioProject
... Echoing ifudontmind_plzz would it be possible to get an example of the code to use the csv file for the download? ...
written 2.1 years ago by 1103005530

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