User: nusrat.bot

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Posts by nusrat.bot

<prev • 20 results • page 1 of 2 • next >
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miRNA, siRNA detection tool from the genomic sequence
... Hello, Everybody, I am interested in finding the regulatory effect of transposable element (TE). it is well recorded that transposable element derived siRNA or microRNA could have a significant effect on gene regulation. I have some particular targeted transposable element mainly retrotransposon DNA ...
rna-seq written 2.3 years ago by nusrat.bot0
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Suitable tool for full length LTR (long terminal Repeat)-retrotransposon
... Hello Everybody, I have to find full-length LTR-retrotransposon from the publicly available assembled database. Can anybody please suggest me suitable tools and procedure. I have just started today and have no idea where to start. I know some tools like LTR-finder, LTR-harvester. But those are Linu ...
gene sequence written 2.4 years ago by nusrat.bot0 • updated 2.4 years ago by genomax78k
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Available tools for structural annotation sketch
... Hello Dear Everybody, I am analyzing the structural diversity of particular segment like a type of LTR-Retrotransposon. I have 5 sequence per type of LTR retrotransposon. Now in each sequence, I have identified and annotate several structural motifs like LTR, RTgene, RH etc. Now I want to draw a l ...
sequence written 2.5 years ago by nusrat.bot0
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Comment: C: How to interpret phylogenetic Dendrogram
... Thank you very much:)) ...
written 2.5 years ago by nusrat.bot0
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Comment: C: How to interpret phylogenetic Dendrogram
... Daer jrj.healey, could you please tell me what kind of software I can use to do pre-clustering my protein sequence ...
written 2.6 years ago by nusrat.bot0
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Comment: C: How to interpret phylogenetic Dendrogram
... Thank you very much, it will be very useful:)) ...
written 2.6 years ago by nusrat.bot0
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How to interpret phylogenetic Dendrogram
... Hello Everybody, For the first time, I have generated phylogenetic Dendrogram from about 4 family and 29 superfamily protein domain sequence from three species and assembled genomic data. My goal is to show how they are related or distantly related at the genomic level in terms of that specific pro ...
alignment written 2.6 years ago by nusrat.bot0 • updated 12 weeks ago by Biostar ♦♦ 20
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Comment: C: Nominal length vs insert size
... But what if I use Pear paired-end merger tools. As because it does not require a direct insert size information. ...
written 2.6 years ago by nusrat.bot0
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Comment: C: Nominal length vs insert size
... Many Many thanks shwethacm:)) ...
written 2.6 years ago by nusrat.bot0
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Comment: C: Nominal length vs insert size
... When I use Galaxy interface for BWA mem of my read pairs can I use built-in index I mean which genome can I use as a reference for BWA mapping to identify the insert distance? Many many thanks:))) ...
written 2.6 years ago by nusrat.bot0

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