User: Thebralyt

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Thebralyt0
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Posts by Thebralyt

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Comment: C: bcftools: how to annotate a file with a larger file using bcftools annotate?
... ahh okay it's good now. thanks ...
written 2.2 years ago by Thebralyt0
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Comment: C: bcftools: how to annotate a file with a larger file using bcftools annotate?
... Wait a minute, now if I try it, it gives me the error: Failed to open smallfile.vcf: unknown file type. Am I supposed to be doing something that I'm not doing? ...
written 2.2 years ago by Thebralyt0
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Comment: C: bcftools: how to annotate a file with a larger file using bcftools annotate?
... Oh, sorry. I haven't run a complete one yet. I'm trying to figure out which INFO tags I want to carry over from one file to the other, which is why I'm trying to view it. **EDIT** Never mind! All good now ...
written 2.2 years ago by Thebralyt0
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Comment: C: bcftools: how to annotate a file with a larger file using bcftools annotate?
... It was bcftools view -H OCT1.genome_min.vcf I tried renaming it and running it again but got the same error. ...
written 2.2 years ago by Thebralyt0
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Answer: A: bcftools: how to annotate a file with a larger file using bcftools annotate?
... Thanks so much for the clarification! I was so confused. Another problem has appeared now, unfortunately. It seems that I now can't even view my vcf files that I previously could. It's nothing to do with the annotation. From command line, I run a new container in the image and mounted a directory t ...
written 2.2 years ago by Thebralyt0
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bcftools: how to annotate a file with a larger file using bcftools annotate?
... Hi I'm really new to bioinformatics, but I'm trying to learn how to use Docker to use linux and bcftools. I need some help annotating a smaller .vcf file using the INFO column of a larger .vcf file. The manual for bcftools is not really clear to me on what options I need and the syntax for those op ...
bcftools centos linux samtools htslib written 2.2 years ago by Thebralyt0

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