User: ibseq12

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ibseq120
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Posts by ibseq12

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bwa mem -w option
... does anybody know what is the range of INT that can be used for the -w option of BWA Mem? (-w ) : INT*Band width. Essentially, gaps longer than *INT* will not be found. Note that the maximum gap length is also affected by the scoring matrix and the hit length, not solely determined by this option. ...
assembly written 10 days ago by ibseq120
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Comment: A: Working example for VCF visualization in Circos
... hi genebow any more thoughts? did you manage to use circos for snp? ...
written 10 weeks ago by ibseq120
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Comment: C: Pca From Vcf Files
... which version if R can be ran into? I got this error: > library("SNPRelate") Error in library("SNPRelate") : there is no package called ‘SNPRelate’ > install.packages("SNPRelate") Installing package into ‘/Users/ib7/Library/R/3.4/library’ (as ‘lib’ is unspecified) Warning in install.packages ...
written 5 months ago by ibseq120
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Answer: A: Homozygous Indel/Snp & Heterozygous Indel/Snp
... Hi just confused about this: AAATTTGGGCTTTAAA - Reference genome (Chr 1) AAATTTGGGtTTTAAA - Non-reference genome (Chr 1 from father) AAATTTGGGtTTTAAA - Non-reference genome (Chr 1 from mother) why we don't info about the biallelic site on the reference genome - is it homo or heterozygous? E.g. co ...
written 9 months ago by ibseq120

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