User: snoopy84

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snoopy840
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Posts by snoopy84

<prev • 4 results • page 1 of 1 • next >
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RSEM RNAseq - comparison between samples
... Hiya, I have RSEM data from TCGA. Is this the same as TPM? Can I compare the expression of two different genes within the same sample? Thanks for your help, sorry if this a basic question. ...
rna-seq rsem written 17 months ago by snoopy840 • updated 17 months ago by Michele Busby1.9k
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Answer: A: Differential expression gene list from TCGA level 3 RNASeq V2 datasets downloade
... I have the same doubt here. What is the best method to calculate DE genes from RSEM data (TCGA). I dont have access to the raw (counts) data. Can I use limma + eBayes in RSEM data? Cheers. ...
written 17 months ago by snoopy840
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KNN and nearest centroid
... Hey, Is K-nearest neigbour the same thing as nearest centroid classification (e.g. in gene expression and subgroups)? Thanks ...
centroid knn written 17 months ago by snoopy840 • updated 17 months ago by Ahill1.4k
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How do I calculate DE genes from RSEM data?
... Hey, I downloaded the TCGA data "RNA_Seq_v2_expression_median.txt" from cBioPortal. The profile description is: Expression levels for 20532 genes in 1212 brca cases (RNA Seq V2 RSEM). Can I use limma to calculate differentially expressed genes from RSEM data (after log2 (rsem+1) normalization)? ...
tcga rna-seq rsem limma written 20 months ago by snoopy840

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