User: Wietje

gravatar for Wietje
Wietje10
Reputation:
10
Status:
New User
Location:
Last seen:
an hour ago
Joined:
4 months ago
Email:
n****@fbn-dummerstorf.de

Posts by Wietje

<prev • 8 results • page 1 of 1 • next >
0
votes
2
answers
86
views
2
answers
Answer: A: Making UpSetR plot with title
... Have you tried adding the usual R-option for a title in plot functions? --> main="acb" ...
written 3 hours ago by Wietje10
0
votes
1
answer
151
views
1
answers
Comment: C: ERROR: Duplicate row.names not allowed
... I suppose that your map file has no header, so the number of SNPs should equal the number of lines. In Unix you could easily check with >> wc -l In case the hap file contains only the haplotypes and no other information you should have two columns per genotype (for both alleles), so the number ...
written 6 days ago by Wietje10
1
vote
1
answer
151
views
1
answers
Answer: A: ERROR: Duplicate row.names not allowed
... Have you checked whether the numbers of SNPs are the same in your map file and the hap file? ...
written 11 days ago by Wietje10
0
votes
1
answer
130
views
1
answers
Comment: C: PLINK 1.9 mendel errors trios
... Thanks a lot, that did the trick! ...
written 5 weeks ago by Wietje10
2
votes
1
answer
130
views
1
answer
PLINK 1.9 mendel errors trios
... Hello biostars! I have a ped-file that contains pedigree information for most of my sample animals and would like to check for mendelian errors but for some reason PLINK (version 1.9) does not recognize duos or trios at all. The set contains full and half sibs and for now my family ID is identical ...
mendelian error plink written 5 weeks ago by Wietje10 • updated 5 weeks ago by chrchang5232.8k
1
vote
2
answers
206
views
2
answers
Answer: C: Bedtools intersect QTL animalgenome
... It's alright, I found the bug -> removing lines with missing coordinates and duplicates does the trick (http://seqanswers.com/forums/showthread.php?t=69484), it works now. ...
written 4 months ago by Wietje10
0
votes
2
answers
206
views
2
answers
Answer: A: Bedtools intersect QTL animalgenome
... The QTL-file (bed format) starts with several comment lines, each starting with # and the "normal content" look like this: X 65152465 65152505 Body weight (mature) QTL (65327) + 65152465 65152505 . . . . X 65221953 65221993 Body weight (mature) QTL (65328) + 65221953 65221993 . . . . X 64847299 ...
written 4 months ago by Wietje10
1
vote
2
answers
206
views
2
answers
Bedtools intersect QTL animalgenome
... I am trying to find QTLs in the bovine genome (downloaded as bed-file from the CattleQTLdb here: http://www.animalgenome.org/cgi-bin/QTLdb/BT/download?file=bedUMD_3.1) that intersect with candidate lnc's I've filtered out with FEElnc. I have unzipped the file and tried the bedtools intersect comma ...
rna-seq written 4 months ago by Wietje10

Latest awards to Wietje

Scholar 4 months ago, created an answer that has been accepted. For C: Bedtools intersect QTL animalgenome

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1677 users visited in the last hour