User: Satish Gupta
Satish Gupta • 40
- Reputation:
- 40
- Status:
- New User
- Location:
- Warsaw, Poland
- Last seen:
- 2 years, 3 months ago
- Joined:
- 8 years, 5 months ago
- Email:
- s*********@gmail.com
I am doing Phd from Warsaw Medical University...
Posts by Satish Gupta
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What is the confidence level for calling variants in "homopolymer and low complexity repeat regions"
... Hi Friends,
We are using NGS data from TSACP illumina 48 gene amplicon panel for diagnostic purpose. The data analysis results into lot of variants lying in the "homopolymer and repeat regions" with very good number of supporting reads. The Base Quality, Mapping Quality, Strand Bias and other param ...
written 3.5 years ago by
Satish Gupta • 40
• updated
3.5 years ago by
Istvan Albert ♦♦ 78k
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... Hi Friends,
What is the best way to go for detecting copy number variation in Tumor only samples from NGS of Somatic cancer Amplicon panel from Illumina? I am able to do if I have a paired sample (Normal-Tumor).
I will be great for any suggestions or tools.
Regards,
Satish
...
written 4.0 years ago by
Satish Gupta • 40
• updated
4.0 years ago by
Paul • 1.2k
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... According to my experience, sometimes there are hidden characters inside your sentences or sequences in case of you which a tool does not recognize. I have experienced it some time reading protein molecules from PDB. As u had said, after replication, its reading. You can check your sequences in VI E ...
written 8.4 years ago by
Satish Gupta • 40
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... Hi Fred,
If you have a set of probesets, just go to DAVID tool,and there is a option to paste your probeset IDs. Ypu will get the annotation there according to your interest. Hope you will find it useful.
Cheers
Satish ...
written 8.4 years ago by
Satish Gupta • 40
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