User: Satish Gupta

gravatar for Satish Gupta
Satish Gupta40
Reputation:
40
Status:
New User
Location:
Warsaw, Poland
Last seen:
1 year, 9 months ago
Joined:
7 years, 11 months ago
Email:
s*********@gmail.com

I am doing Phd from Warsaw Medical University...

Posts by Satish Gupta

<prev • 4 results • page 1 of 1 • next >
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What is the confidence level for calling variants in "homopolymer and low complexity repeat regions"
... Hi Friends, We are using NGS data from TSACP illumina 48 gene amplicon panel for diagnostic purpose. The data analysis results into lot of variants lying in the "homopolymer and repeat regions" with very good number of supporting reads. The Base Quality, Mapping Quality, Strand Bias and other param ...
next-gen snp sequencing written 3.0 years ago by Satish Gupta40 • updated 3.0 years ago by Istvan Albert ♦♦ 76k
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"Copy Number Variation" detection in Tumor only sample
... Hi Friends, What is the best way to go for detecting copy number variation in Tumor only samples from NGS of Somatic cancer Amplicon panel from Illumina? I am able to do if I have a paired sample (Normal-Tumor). I will be great for any suggestions or tools. Regards, Satish ...
somatic amplicon panel copy number variation written 3.5 years ago by Satish Gupta40 • updated 3.5 years ago by Paul1.1k
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Answer: A: Problems Importing Sequences Using Seqinr In R
... According to my experience, sometimes there are hidden characters inside your sentences or sequences in case of you which a tool does not recognize. I have experienced it some time reading protein molecules from PDB. As u had said, after replication, its reading. You can check your sequences in VI E ...
written 8.0 years ago by Satish Gupta40
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Answer: A: How To Filter Affymetrix Probes Related To Murine Genes Encoding Membran Protein
... Hi Fred, If you have a set of probesets, just go to DAVID tool,and there is a option to paste your probeset IDs. Ypu will get the annotation there according to your interest. Hope you will find it useful. Cheers Satish ...
written 8.0 years ago by Satish Gupta40

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