User: a511512345

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a51151234580
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China guangxi nanning
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Posts by a511512345

<prev • 37 results • page 1 of 4 • next >
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Comment: C: For GEO data, how to calculate the average methylation level of the gene promote
... Thank you for your help, I will try it. ...
written 4 months ago by a51151234580
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For GEO data, how to calculate the average methylation level of the gene promoter region using R.
... Hello, guys I am currently learning to use the TCGA-Assembler package to process methylated chips from TCGA. TCGA-Assembler provides a function (*CalculateSingleValueMethylationData*) to calculate the average methylation level of a particular region of a gene. However, for GEO data, how to calcula ...
geo methylation written 4 months ago by a51151234580 • updated 4 months ago by Kevin Blighe45k
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Comment: C: Same data for the same code, why do I get different numbers of DEGs?
... I appreciate your help very much, thanks a lot! ...
written 13 months ago by a51151234580
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Comment: C: Same data for the same code, why do I get different numbers of DEGs?
... thanks for your answer,i will try ...
written 13 months ago by a51151234580
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Comment: A: Same data for the same code, why do I get different numbers of DEGs?
... thanks for reply! So,can i run untill i get ideal numbers of DEGs? ...
written 13 months ago by a51151234580
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Same data for the same code, why do I get different numbers of DEGs?
... Same data for the same code, why do I get different numbers of DEGs. Hello everyone, I encountered a problem when using the samr package to find differential expressed genes. The same data for the same code, why do I get a different number of DEGs? For example, I got 108 DEGs in one analysis, but I ...
samr,deg written 13 months ago by a51151234580
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how to use GSEA analysis of RNA-seq expression profile data?
... Hello everyone I am studying GSEA analysis and I know how to analyze the array expression profile using GSEA desktop application. But I do not know how to use GSEA analysis of RNA-seq expression profile data which display as read counts? Can I use the VOOM function in limma package to normalize the ...
gsea rna-seq written 15 months ago by a51151234580 • updated 15 months ago by Santosh Anand4.9k
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Comment: C: A doubt about the clinical information of hepatocellular carcinoma in TCGA
... Thank you for your friendly and positive answer. I’ve learned a lot ...
written 16 months ago by a51151234580
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Comment: A: A doubt about the clinical information of hepatocellular carcinoma in TCGA
... Thank you for your friendly and positive answer. I’ve learned a lot ...
written 16 months ago by a51151234580
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A doubt about the clinical information of hepatocellular carcinoma in TCGA
... hello Experts, I downloaded the clinical information of hepatocellular carcinoma in TCGA from https://xenabrowser.net/datapages/?dataset=TCGA-LIHC%2FXena_Matrices%2FTCGA-LIHC.GDC_phenotype.tsv&host=https%3A%2F%2Fgdc.xenahubs.net. One of the clinical information is "vascular_tumor_cell_type". It ...
tcga written 16 months ago by a51151234580

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Popular Question 4 weeks ago, created a question with more than 1,000 views. For how to predict lncRNA based on gene symbol?
Popular Question 5 months ago, created a question with more than 1,000 views. For build the expression matrix step by step from GEO raw data
Popular Question 9 months ago, created a question with more than 1,000 views. For build the expression matrix step by step from GEO raw data
Popular Question 9 months ago, created a question with more than 1,000 views. For how to use GSEA analysis of RNA-seq expression profile data?
Supporter 12 months ago, voted at least 25 times.

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