User: a511512345

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a511512345120
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China guangxi nanning
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Posts by a511512345

<prev • 42 results • page 1 of 5 • next >
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Comment: C: How to identify cell types using addModuleScore function?
... Thank you for this answer. However, I feel very hard to follow the answer as it was not an example. ...
written 10 weeks ago by a511512345120
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How to identify cell types using addModuleScore function?
... Hello, there, I am learning single-cell RNA-seq analysis using Seurat package. I have clustered cells into 12 clusters. Next, I want to identify the cell types of these cell clusters. I read some paper using addModuleScore function based on the known cell markers. I did not find any example. howe ...
single cell rna-seq written 11 weeks ago by a511512345120
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How to predict new data using NMF classifier
... Hello there, I am doing NMF analysis using NMF package. When I built a new NMF classifier, I did not know how to predict new data. Does anyone know what R packages I can use? thank you very much. ...
nmf written 4 months ago by a511512345120
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How to caculate stemness for samples from GEO
... hello guys: I have known that we can calculate the stemness for the samples from TCGA using TCGAanalyze_Stemness function in TCGAbiolinks package. (Am I right ?) However,how to calculate the stemness for the sample from GEO? Can someone help me? Thank you very much! ...
stemness cancer written 16 months ago by a511512345120
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Comment: C: how to predict lncRNA based on gene symbol?
... Thanks. You always help me a lot. ...
written 16 months ago by a511512345120
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Comment: C: For GEO data, how to calculate the average methylation level of the gene promote
... Thank you for your help, I will try it. ...
written 21 months ago by a511512345120
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For GEO data, how to calculate the average methylation level of the gene promoter region using R.
... Hello, guys I am currently learning to use the TCGA-Assembler package to process methylated chips from TCGA. TCGA-Assembler provides a function (*CalculateSingleValueMethylationData*) to calculate the average methylation level of a particular region of a gene. However, for GEO data, how to calcula ...
geo methylation written 21 months ago by a511512345120 • updated 21 months ago by Kevin Blighe67k
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Comment: C: Same data for the same code, why do I get different numbers of DEGs?
... I appreciate your help very much, thanks a lot! ...
written 2.5 years ago by a511512345120
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Comment: C: Same data for the same code, why do I get different numbers of DEGs?
... thanks for your answer,i will try ...
written 2.5 years ago by a511512345120
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Comment: A: Same data for the same code, why do I get different numbers of DEGs?
... thanks for reply! So,can i run untill i get ideal numbers of DEGs? ...
written 2.5 years ago by a511512345120

Latest awards to a511512345

Great Question 8 months ago, created a question with more than 5,000 views. For how to use GSEA analysis of RNA-seq expression profile data?
Student 8 months ago, asked a question with at least 3 up-votes. For which form of miRNA corresponding to TCGA?
Popular Question 11 months ago, created a question with more than 1,000 views. For Which GO Terms are related to cancer?
Popular Question 13 months ago, created a question with more than 1,000 views. For How to add annotation to lncRNA
Popular Question 15 months ago, created a question with more than 1,000 views. For what kind of data can be directly WGCNA?
Popular Question 16 months ago, created a question with more than 1,000 views. For build the expression matrix step by step from GEO raw data
Popular Question 17 months ago, created a question with more than 1,000 views. For how to predict lncRNA based on gene symbol?
Popular Question 22 months ago, created a question with more than 1,000 views. For build the expression matrix step by step from GEO raw data
Popular Question 2.1 years ago, created a question with more than 1,000 views. For build the expression matrix step by step from GEO raw data
Popular Question 2.1 years ago, created a question with more than 1,000 views. For how to use GSEA analysis of RNA-seq expression profile data?
Supporter 2.4 years ago, voted at least 25 times.

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