User: taoi2

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taoi210
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2 years, 1 month ago
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Posts by taoi2

<prev • 8 results • page 1 of 1 • next >
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What is the difference between " ENSG00000002586.1" and "ENSG00000002586.19_PAR_Y" in Ensembl ID ?
... Hello ! I don't know what the difference between " ENSG00000002586.1" and "ENSG00000002586.19_PAR_Y" in Ensembl gene/transcripts ID means. How do you deal with these ID with "_PAR_Y" in RNA-seq mapping process ? Thanks, ...
genome ensembl rna-seq written 12 days ago by taoi210 • updated 12 days ago by Emily_Ensembl19k
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What dose this error of hisat2 mean? - (ERR): hisat2-align died with signal 11 (SEGV)
... Dear hisat2 users I have used STAR, but am a New user of hisat2. I installed hisat2 latest version via bioconda. After downloading genome.fa from GENCODE, I made genome iindex without any error. Next, I conducted the following command for pair-end reads mapping: $ hisat2 -x /Volumes/path-to/G ...
mapping rna-seq hisat2 written 6 months ago by taoi210 • updated 6 months ago by genomax71k
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Answer: A: How to perform gene ontology analysis with list of upregulated and down regulate
... I recommend you to visit //toppgene.cchmc.org . ...
written 18 months ago by taoi210
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Answer: A: Please advice on an experiment set-up for RNA-Seq
... I think kpr's comment is good suggestion. If you think time course experiments is much important, I recommend to you that sampling should be done with a constant time interval: "0, 3 and 6 days after infection" instead of "0, 3 and 7 days after infection". In pharmacological statistic field, the t ...
written 18 months ago by taoi210
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Comment: C: Failed to install Cufflinks using linuxbrew
... Thanks, cpad0112 ! I am also familiar with anaconda, and Conda has only ver2.2.1 for py27. A developer of the software package I will use, however, recommends use of the version Cufflinks 2.1.0 (or lower version). So, I will use the binary in the Conda env. Sincerely yours, ...
written 18 months ago by taoi210
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Comment: A: Failed to install Cufflinks using linuxbrew
... Thanks for your quick reply. As you wrote, I don't use HISAT2/StringTie/Ballgown RNA-seq pipeline in this time. I try to run a software package that uses cufflinks in its process. I will use the binary according to your advice. Sincerely yours, ...
written 18 months ago by taoi210
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Failed to install Cufflinks using linuxbrew
... After I used cufflinks which was installed to my older PC via Linuxbrew 2 years ago, I tried to installed to my new PC in the same way. However, I failed as the followed. Boost was installed using brew before installing cufflinks. Now, doesn't Homebrew/Linuxbrew support cufflinks? $ brew install ...
software error rna-seq written 18 months ago by taoi210
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Bug ? of AutoDock tools on Windows 10
... Hi, AutoDock tools users I have used both AutoDock vina and AutoDock tools on Ubuntu 14.04 and OSX (10.9). Because the use of them is now required on Win 10, I set up by using the latest installer .exe file. I installed them without any error messages, and then conducted docking simulation using t ...
software error autodock written 2.1 years ago by taoi210

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Popular Question 17 months ago, created a question with more than 1,000 views. For Bug ? of AutoDock tools on Windows 10

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