User: domenico.somma

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10
Status:
New User
Location:
Glasgow University
Twitter:
@dom_somma
Last seen:
9 months, 2 weeks ago
Joined:
1 year, 4 months ago
Email:
d*************@glasgow.ac.uk

Posts by domenico.somma

<prev • 4 results • page 1 of 1 • next >
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Answer: A: Cufflinks output - how to produce heatmap of diff exp genes as z-scores
... Hello, I wrote a python module named Papillon for this purpose. Python normally is easier to learn than R. You can find Papillon [here][1]. There is a tutorial, you can install it with pip or conda, and make a heatmap is very easy: import papillon as pp MyExp=pp.read_db("My Experiment ...
written 11 months ago by domenico.somma10
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Tool: Papillon: a python alternative to plot/heatmap Galaxy RNA-seq data
... Hello, I wrote a python module to plot gene expression and heatmap from cuffdiff output. You can install it using pip or conda-forge. Any feedback or suggestion would be appreciate. [Papillon is available here][1], there is a [tutorial][2] as well. Best Regards Dom [1]: https://github.com/do ...
galaxy cuffdiff tool heatmap python rna-seq written 11 months ago by domenico.somma10
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Answer: A: How to export the output list of csCluster( ) from CummeRbund?
... I found a workaround. If you are using Rstudio: options(max.print=1000000) and then just: capture.output(data,file="export.txt") That's all. Not much pro, but worked for me ...
written 16 months ago by domenico.somma10
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Answer: A: How to export the output list of csCluster( ) from CummeRbund?
... Hi there, I have the same issue. I tried: > write.csv(ic) Error in pam(x = n, k = k) : could not find function "pam" but didn't work. On cummeRbund manual there is: > csCluster Returns a ggplot2 plot object with geom_line layer plotting > FPKM values over conditions faceted by k- ...
written 16 months ago by domenico.somma10

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