User: saurabh.j.pradhan

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Peak calling macs vs Homer
... Hi, I am trying to analyze ChIP seq data for a factor which do not behave as a typical transcription factor. When I am using MACS2 i hardly get any significant peaks. Around 20. And when I perform Homer I get 20000. I am not able to understand which peak caller to go for. Macs is not even picking up ...
chip-seq written 4 months ago by saurabh.j.pradhan10 • updated 12 weeks ago by Kevin Blighe9.0k

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