User: abhilashreddy495

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Posts by abhilashreddy495

<prev • 21 results • page 1 of 3 • next >
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(Closed) pmc xml to pdf by python
... I suspect that there is some simple solution for this case. How do you handle pmc.xml files lwith Python? Is there any tools/libraries for converting PMC XML to raw text(original article)? ...
xml pmc python articles parsing written 4 months ago by abhilashreddy49510
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(Closed) Conversion of XML format research paper to PDF
... Hello, I have downloaded few research papers in xml format. Is there any code or tools available for Conversion of XML format research paper to PDF. ...
xml tool sequencing written 4 months ago by abhilashreddy49510 • updated 4 months ago by Pierre Lindenbaum131k
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Network analysis of RT PCR gene expression data
... Hello, We have the gene expression data(Fold Change Values) from RT PCR. Simple network analysis can be done by using Gene ID in Genemania or String DB. I want to know is there anyway to incorporate these value in Pathways network(HUMAN) and check there expression/change in network ? ...
rt pcr network pathway analysis gene network written 13 months ago by abhilashreddy49510
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metavelvet assembly amos file generation for scaffolding
... meta-velvetg /backup/abhilash/velvet/ -ins_length 200 -exp_covs 9_7_5.5_2 -amos_file yes -scaffolding no [meta-velvetg] Check command line options... OK. Your command line options seem to be good. [meta-velvetg] Load meta-graph ... [0.000000] Reading read set ...
assembly metagenomics next-gen ngs assembler written 19 months ago by abhilashreddy49510 • updated 19 months ago by Biostar ♦♦ 20
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changing fasta to meg format
... hello i want to covert the .fasta file to .meg for 300 sample. is there any command which could help this in linux ...
dnaseq megatool conversion written 23 months ago by abhilashreddy49510 • updated 23 months ago by Michael Dondrup48k
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Comment: C: Conversion of sam to bam using samtools
... The same error as above. by using hisat2 ...
written 2.3 years ago by abhilashreddy49510
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Comment: C: Conversion of sam to bam using samtools
... [bam_header_read] EOF marker is absent. The input is probably truncated. ...
written 2.3 years ago by abhilashreddy49510 • updated 2.3 years ago by finswimmer14k
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Comment: C: Conversion of sam to bam using samtools
... to the above command suggested [samopen] no @SQ lines in the header. [sam_read1] missing header? Abort! ...
written 2.3 years ago by abhilashreddy49510 • updated 2.3 years ago by finswimmer14k
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Comment: C: Conversion of sam to bam using samtools
... head '/media/abhilash/Abhilash/grch38/outputn.sam' �BC!sr�ed�|�t� ...
written 2.3 years ago by abhilashreddy49510 • updated 2.3 years ago by finswimmer14k
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Comment: C: Conversion of sam to bam using samtools
... samtools view -bT ref.fastq test.sam >output.bam ...
written 2.3 years ago by abhilashreddy49510 • updated 2.3 years ago by finswimmer14k

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