User: Ali

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Ali0
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Posts by Ali

<prev • 11 results • page 1 of 2 • next >
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Comment: C: RNA-seq healthy sample
... After using intensive bioinformatics tools to identify list of gene for specific subtype of cancer the lab will be have high probability to get robust result ...
written 7 weeks ago by Ali0
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Comment: C: RNA-seq healthy sample
... My reason of doing this is to have specific genes for each subtype then go to lab to validate the result. ...
written 7 weeks ago by Ali0
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Comment: C: RNA-seq healthy sample
... there is two data sets for lung cancer if you want to do differential gene expression analysis you need to use normal sample(as control). If you just run the this two file you will get genes that differentiate between two subtype But what about normal you will need it to confirm that gene expression ...
written 7 weeks ago by Ali0
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Comment: C: RNA-seq healthy sample
... TCGA provide RNA-seq count for different type of cancer which already being used in differential gene expression analysis. I manage to do the analysis and the result was fine for this compression only need of normal health sample to increase the specificity ...
written 8 weeks ago by Ali0
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Comment: C: RNA-seq healthy sample
... Thanks for reply I compare adult with paeditric in leukemia Aiming to have specific set of genes for each using TCGA and TARGET the finding was good only need RNA-seq data from healthy sample regards ...
written 8 weeks ago by Ali0
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RNA-seq healthy sample
... Hi I'm doing differential gene expression analysis in two type of leukemia I need normal data (RNA-seq data). the data were downloaded from DGC hub in the xena website I have done the differential expression but I release i should use the healthy sampe as reference to give clear idea how the gen ...
gene rna-seq written 8 weeks ago by Ali0 • updated 8 weeks ago by ATpoint28k
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Comment: C: Normal sample from GDC
... Thnks Kevin This page no longer available Regards ...
written 9 weeks ago by Ali0
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Normal sample from GDC
... Hi I use two dataset (RNAseq data )of cancer they relatively similar to perform differential gene expression to select list of specific genes for each. But I realise I should do it each type against normal sample I struggle to find normal sample in TCGA & GDC database Please advice Kind R ...
gene rna-seq written 10 weeks ago by Ali0 • updated 10 weeks ago by Kevin Blighe53k
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Comment: C: can I use cytoscape for genie3 result?
... @Leite Thanks for replying I will try set threshold as you said Kind regards ...
written 12 weeks ago by Ali0
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can I use cytoscape for genie3 result?
... Hi I wonder if i could use cytoscape for genie3(gene regulatory network) result for visualization of the interaction among the input genes. regards ---------- **EDIT:** Thanks Leite The result file was in the csv format, the major challenge for me was the selection of the best informative i ...
R rna-seq written 3 months ago by Ali0 • updated 22 days ago by Biostar ♦♦ 20

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