User: Ali

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Ali0
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Posts by Ali

<prev • 19 results • page 1 of 2 • next >
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CSV file pandas error
... Hi everyone I have a problem with opening a large CSV file in pandas, Normally I visualize the data in excel then work on it in pandas to extracting the desires data. but I got the following error ParserError: Error tokenizing data. C error: Expected 2 fields inline 35, saw 527 this is the ...
gene rna-seq written 14 days ago by Ali0 • updated 14 days ago by curious450
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Comment: C: FPKM to HTseq
... Thanks for your reply I will check it regards ...
written 5 weeks ago by Ali0
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FPKM to HTseq
... Hi everyone I using GDC-TCGA data to training in the SVM model. For the testing set Use GEO data. The problem is GDC-TCGA was HT-seq and GEO FPKM. is there any formula or any conversion tool to convert from FPKM to counts ???? Kind regards ...
gene rna-seq written 5 weeks ago by Ali0 • updated 5 weeks ago by ATpoint40k
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Comment: C: testing set for RNA-seq AML
... Thanks I will try Regards ...
written 5 weeks ago by Ali0
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Comment: C: testing set for RNA-seq AML
... Thanks for your reply the analysis was for classification where sample grouped based on clinical information so any data I use for testing the model should have some clinical information. regards ...
written 5 weeks ago by Ali0
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Comment: C: testing set for RNA-seq AML
... to test the model I have to use the clinical file as well where I can specify the sample class All the issue I am facing based on the clinical file (sample information) ...
written 5 weeks ago by Ali0
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Comment: C: testing set for RNA-seq AML
... Thanks for your reply I use TCGA data was fine to download and run the analysis where the sample and genes are gathered in one csv file. GEO is not the same. looking for similar Kind regards ...
written 5 weeks ago by Ali0
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testing set for RNA-seq AML
... Hi everyone I use GDC TCGA to train machine learning, due to the low number of samples in the dataset I use I can't extract the testing set. So, I want to get testing set for RNA-seq AML from different resources. Kind regards ...
rna-seq written 5 weeks ago by Ali0
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Comment: C: RNA-seq healthy sample
... After using intensive bioinformatics tools to identify list of gene for specific subtype of cancer the lab will be have high probability to get robust result ...
written 10 months ago by Ali0
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Comment: C: RNA-seq healthy sample
... My reason of doing this is to have specific genes for each subtype then go to lab to validate the result. ...
written 10 months ago by Ali0

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