User: Karma

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Karma220
Reputation:
220
Status:
Trusted
Location:
India
Last seen:
1 week, 6 days ago
Joined:
2 years, 5 months ago
Email:
s******@gmail.com

Posts by Karma

<prev • 43 results • page 1 of 5 • next >
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Answer: A: Building Dict File for GATK
... Change your command to the following: java -jar picard.jar CreateSequenceDictionary R=Homo_sapiens_assembly18.fasta O=Homo_sapiens_assembly18.dict ...
written 14 days ago by Karma220
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Answer: A: Pipeline for exome sequencing
... The pipeline for exome analysis is well documented here [exome_analysis][1] [1]: https://github.com/snijesh/exome_analysis ...
written 28 days ago by Karma220
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Comment: C: What is configuration required for exome sequence analysis?
... I have a system with following configuration Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit CPU(s): 16 Thread(s) per core: 1 Core(s) per socket: 8 CPU socket(s): 2 NUMA node(s): 2 Vendor ID: Genui ...
written 7 weeks ago by Karma220
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What is configuration required for exome sequence analysis?
... I have about 40 exomes to be analyzed to call the variants. What should be the best system configuration to get these results in the fastest way ...
next-gen rna-seq configuration written 8 weeks ago by Karma220
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Comment: C: R: Error In Scan ... Line 7 Did Not Have 3 Elements
... This error is pretty self-explanatory. There seem to be data missing in the first line of your data file (or second line) Also, just check your header. Make your header single word. Also, you can use read.table("test.txt", header = TRUE, fill = TRUE) ...
written 8 months ago by Karma220
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Comment: C: Converting SNP names from Illumina GSA array to rsID using PLINK
... open the file in excel. Select the column containing multiple ID Ctrl+F Replace: ,* ...
written 16 months ago by Karma220
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Answer: A: Issue with installing bowtie2
... Try the following commands ​​sudo apt-get install libtbb-dev ​​sudo apt-get install g++ make ...
written 2.3 years ago by Karma220
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Answer: A: Issue with bowtie2-align during installation of bowtie2
... Try following commands ​sudo apt-get install g++ ​sudo apt-get install libtbb-dev make ...
written 2.3 years ago by Karma220
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Where can I download Clinical or Medical Exome?
... I have read about the clinical exome from some research articles [here][1], [here][2] and [here][3]. They tell about approximately 3000 genes in the clinical exome. Are there any databases from which I can download whole clinical exome data. Like gene name, location, variants and associated disease ...
exome genome rna-seq clinical_exome written 2.3 years ago by Karma220 • updated 2.3 years ago by ptinto200
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Answer: A: Error while running rnaseq_pipeline.sh provided by hisat2
... Try running bin/bash path/to/rnaseq_pipeline.sh or sh rnaseq_pipeline.sh ...
written 2.3 years ago by Karma220

Latest awards to Karma

Popular Question 16 months ago, created a question with more than 1,000 views. For How to use GRCh38 as reference for Annotating the variants using Annovar?
Popular Question 16 months ago, created a question with more than 1,000 views. For Where can I download Clinical or Medical Exome?
Popular Question 16 months ago, created a question with more than 1,000 views. For RNA-Seq or Exome Seq for Clinical data analysis
Popular Question 17 months ago, created a question with more than 1,000 views. For RNA-Seq or Exome Seq for Clinical data analysis
Popular Question 18 months ago, created a question with more than 1,000 views. For RNA-Seq or Exome Seq for Clinical data analysis
Student 2.4 years ago, asked a question with at least 3 up-votes. For RNA-Seq or Exome Seq for Clinical data analysis

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