User: Karma

gravatar for Karma
Karma200
Reputation:
200
Status:
Trusted
Location:
India
Last seen:
3 months, 2 weeks ago
Joined:
1 year, 9 months ago
Email:
s******@gmail.com

Posts by Karma

<prev • 38 results • page 1 of 4 • next >
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Comment: C: Converting SNP names from Illumina GSA array to rsID using PLINK
... open the file in excel. Select the column containing multiple ID Ctrl+F Replace: ,* ...
written 8 months ago by Karma200
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Answer: A: Issue with installing bowtie2
... Try the following commands ​​sudo apt-get install libtbb-dev ​​sudo apt-get install g++ make ...
written 19 months ago by Karma200
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Answer: A: Issue with bowtie2-align during installation of bowtie2
... Try following commands ​sudo apt-get install g++ ​sudo apt-get install libtbb-dev make ...
written 19 months ago by Karma200
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7 follow
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Where can I download Clinical or Medical Exome?
... I have read about the clinical exome from some research articles [here][1], [here][2] and [here][3]. They tell about approximately 3000 genes in the clinical exome. Are there any databases from which I can download whole clinical exome data. Like gene name, location, variants and associated disease ...
exome genome rna-seq clinical_exome written 19 months ago by Karma200 • updated 19 months ago by ptinto190
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Answer: A: Error while running rnaseq_pipeline.sh provided by hisat2
... Try running bin/bash path/to/rnaseq_pipeline.sh or sh rnaseq_pipeline.sh ...
written 19 months ago by Karma200
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Comment: C: Converting sra to fastq
... Add sratoolkit to environment variables EXPORT PATH=$PATH:/path/to/sratoolkit/bin/ fastq-dump --split-3 filename.sra ...
written 19 months ago by Karma200
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Answer: A: How to split SRA/fastq files
... There are options in ENA to download both fastq and .sra files. You can download it one by one and perform following command fastq-dump --split-3 filename.sra ...
written 19 months ago by Karma200 • updated 19 months ago by genomax67k
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Answer: A: How to get adapter information from SRA dump FASTQ file??
... You can use autoadapt [link][1]. This tool automatically detects adaptors and removes it. The packages used by autoadapt are fastqc and cutadapt usage `autoadapt.pl input.fastq output.fastq` [1]: https://github.com/optimuscoprime/autoadapt ...
written 19 months ago by Karma200
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Comment: C: VCF to ANNOVAR format
... ./convert2annovar.pl -format vcf4 input.vcf > output.vcf ...
written 20 months ago by Karma200
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Comment: C: What Agilent Interval Files (.Bed) Should I Use For Exome Variant Calling With G
... Why cant we use the default interval list as mentioned here [here][1] [1]: https://www.biostars.org/p/273234/ ...
written 20 months ago by Karma200

Latest awards to Karma

Popular Question 8 months ago, created a question with more than 1,000 views. For How to use GRCh38 as reference for Annotating the variants using Annovar?
Popular Question 8 months ago, created a question with more than 1,000 views. For Where can I download Clinical or Medical Exome?
Popular Question 8 months ago, created a question with more than 1,000 views. For RNA-Seq or Exome Seq for Clinical data analysis
Popular Question 9 months ago, created a question with more than 1,000 views. For RNA-Seq or Exome Seq for Clinical data analysis
Popular Question 10 months ago, created a question with more than 1,000 views. For RNA-Seq or Exome Seq for Clinical data analysis
Student 21 months ago, asked a question with at least 3 up-votes. For RNA-Seq or Exome Seq for Clinical data analysis

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