User: Astrid_Ensembl

Reputation:
70
Status:
Trusted
Location:
EMBL-EBI
Website:
http://www.ensembl.org/
Twitter:
@AstridGAGall
Last seen:
5 hours ago
Joined:
6 months ago
Email:
a****@ebi.ac.uk

Ensembl Outreach Officer

Posts by Astrid_Ensembl

<prev • 5 results • page 1 of 1 • next >
0
votes
2
answers
225
views
2
answers
Answer: A: Reannotate genomic data with new Ensemble release
... I see you have already found the comprehensive post/thread on various options for converting genome coordinates: https://www.biostars.org/p/65558/ ...
written 12 weeks ago by Astrid_Ensembl70
2
votes
2
answers
225
views
2
answers
Answer: A: Reannotate genomic data with new Ensemble release
... You can use the Assembly Converter in Ensembl to convert coordinates from one genome assembly to another: http://www.ensembl.org/Homo_sapiens/Tools/AssemblyConverter?db=core I assume you work with human data, but the principle is the same for other species. Your data from Ensembl release 73 used t ...
written 3 months ago by Astrid_Ensembl70
2
votes
1
answer
186
views
1
answers
Answer: A: Getting the variants from EnsEMBL
... Genome-wide variation data is available in GVF and VCF format for many species from our FTP server: https://www.ensembl.org/info/data/ftp/index.html You will also find VEP cache files here. ...
written 3 months ago by Astrid_Ensembl70
0
votes
2
answers
2.2k
views
2
answers
Answer: A: Selecting One Ensembl Transcript Id For Each Ensembl Gene Id
... There is a (relatively new) Ensembl training video on YouTube on the topic of 'Choosing a transcript': ...
written 4 months ago by Astrid_Ensembl70 • updated 4 months ago by Istvan Albert ♦♦ 75k
3
votes
1
answer
430
views
1
answers
Answer: A: GENCODE versus Ensembl gene annotations
... The Gencode statistics webpage refers to the annotation on the reference chromosomes only, which has 131,100 transcripts. http://www.gencodegenes.org/mouse_stats/current.html The Ensembl statistics include all primary assembly regions, which explains the higher number of transcripts (131,195). http ...
written 5 months ago by Astrid_Ensembl70

Latest awards to Astrid_Ensembl

Supporter 4 months ago, voted at least 25 times.
Scholar 5 months ago, created an answer that has been accepted. For A: GENCODE versus Ensembl gene annotations
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: GENCODE versus Ensembl gene annotations

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1832 users visited in the last hour