User: Astrid_Ensembl
Astrid_Ensembl • 70
- Reputation:
- 70
- Status:
- Trusted
- Location:
- EMBL-EBI
- Website:
- http://www.ensembl.org/
- Twitter:
- @AstridGAGall
- Last seen:
- 1 month ago
- Joined:
- 10 months ago
- Email:
- a****@ebi.ac.uk
Ensembl Outreach Officer
Posts by Astrid_Ensembl
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... The issue at Ensembl has been fixed now. Many thanks for reporting it and for your patience! ...
written 6 weeks ago by
Astrid_Ensembl • 70
0
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2
answers
105
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... I am sorry that you have experienced this problem. We are aware of an issue on our side and working on a solution. I will post an update as soon as this is fixed. ...
written 6 weeks ago by
Astrid_Ensembl • 70
0
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2
answers
312
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... I see you have already found the comprehensive post/thread on various options for converting genome coordinates:
https://www.biostars.org/p/65558/ ...
written 6 months ago by
Astrid_Ensembl • 70
2
votes
2
answers
312
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2
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... You can use the Assembly Converter in Ensembl to convert coordinates from one genome assembly to another:
http://www.ensembl.org/Homo_sapiens/Tools/AssemblyConverter?db=core
I assume you work with human data, but the principle is the same for other species.
Your data from Ensembl release 73 used t ...
written 7 months ago by
Astrid_Ensembl • 70
2
votes
1
answer
269
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1
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... Genome-wide variation data is available in GVF and VCF format for many species from our FTP server:
https://www.ensembl.org/info/data/ftp/index.html
You will also find VEP cache files here.
...
written 7 months ago by
Astrid_Ensembl • 70
0
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2.5k
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2
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... There is a (relatively new) Ensembl training video on YouTube on the topic of 'Choosing a transcript':
...
written 8 months ago by
Astrid_Ensembl • 70
• updated
8 months ago by
Istvan Albert ♦♦ 77k
3
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1
answer
623
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1
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... The Gencode statistics webpage refers to the annotation on the reference chromosomes only, which has 131,100 transcripts.
http://www.gencodegenes.org/mouse_stats/current.html
The Ensembl statistics include all primary assembly regions, which explains the higher number of transcripts (131,195).
http ...
written 9 months ago by
Astrid_Ensembl • 70
Latest awards to Astrid_Ensembl
Scholar
6 weeks ago,
created an answer that has been accepted.
For A: GENCODE versus Ensembl gene annotations
Supporter
8 months ago,
voted at least 25 times.
Scholar
9 months ago,
created an answer that has been accepted.
For A: GENCODE versus Ensembl gene annotations
Teacher
9 months ago,
created an answer with at least 3 up-votes.
For A: GENCODE versus Ensembl gene annotations
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