User: Wox

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Wox340
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340
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HUJI
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2 months, 2 weeks ago
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3 years, 1 month ago
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Posts by Wox

<prev • 161 results • page 1 of 17 • next >
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Comment: C: In Gene ontology and KEGG analysis, What is the biological definition of p-value
... Thank you very much :) ...
written 12 weeks ago by Wox340
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In Gene ontology and KEGG analysis, What is the biological definition of p-value and (-) log10(FDR) value?
... In Gene ontology and KEGG analysis, Why there are two cutoff values; p-value and (-) log10(FDR) value? What is the role of these two cut-offs? Could bioinformatician give an explanation to a wet lab person? ...
genome gene next-gen rna-seq written 12 weeks ago by Wox340 • updated 12 weeks ago by jared.andrews077.1k
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How could I compare two Gene interaction Networks?
... What are the possible ways that I could compare two Gene interaction Networks? WT upregulated genes interaction network vs `Mutants upregulated genes interaction network` ...
genome gene rna-seq written 4 months ago by Wox340
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Comment: C: What is the meaning of (-) log10(FDR) value, How to compare higher negative valu
... Thank you very much, Prof. Hope you are keeping well. Stay safe and Blessed in this current situation :) ...
written 5 months ago by Wox340
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What is the meaning of (-) log10(FDR) value, How to compare higher negative value to lower negative value?
... What is the meaning of **(-) log10(FDR)** value How to interpret higher negative value to lower negative value by comparing each other? e.g. 1: Ribosome : *(-) log10(FDR) = 25* Golgi : *(-) log10(FDR) = 5* e.g. 2: [![enter image description here][1]][1] [1]: https://i.stack.imgur.com/zCAMa. ...
genome gene rna-seq R written 5 months ago by Wox340 • updated 5 months ago by Istvan Albert ♦♦ 84k
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Comment: C: bioconductor expressionset, summarizedexperiment
... Not for the top-level, Just after normalizing & Imputation steps! ...
written 6 months ago by Wox340
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Comment: C: bioconductor expressionset, summarizedexperiment
... Thank you, Just want to learn how to export data to csv files and working with dplyr. ...
written 6 months ago by Wox340
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bioconductor expressionset, summarizedexperiment
... Could you help me to find Intuitive Introductory resources to `bioconductor expressionset` and `summarizedexperiment` and learn how to work with SE data (At the end wanna handle edgeR, DEP, limma, and DESEQ2 packages by myself) Any gentle introduction? It seems difficult to get familiar with these ...
genome R bioconductor rna-seq written 7 months ago by Wox340
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Gene Ontology enrichment analysis of biological processes for up- and down-regulated genes?
... Is there any **FREE interactive online tool** for `Gene Ontology enrichment analysis of biological processes` for summarizing `up- and down-regulated` **Arabidopsis thaliana genes**? For example, figures look like below; If not, how can I do this in "R"? Could someone provide **Stepwise guida ...
R rna-seq written 8 months ago by Wox340 • updated 8 months ago by grant.hovhannisyan2.0k
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How to get the list of common genes from a VennDiagram?
... `**Package ‘![VennDiagram][1]’.**` How can I get the list of common objects in each combination? For e.g. what are the common 44 Genes in interset (similar image got from online)? I have used below scripts Overlap <- calculate.overlap(x = list(BB, BB, BRR)) Overlap[[1]] But in thi ...
R rna-seq written 8 months ago by Wox340 • updated 8 months ago by manuel.belmadani1.2k

Latest awards to Wox

Great Question 6 months ago, created a question with more than 5,000 views. For How to plot a multiple line graph with Mean and Std Error for following dataset?
Great Question 7 months ago, created a question with more than 5,000 views. For How to plot a multiple line graph with Mean and Std Error for following dataset?
Student 8 months ago, asked a question with at least 3 up-votes. For Concept behind p-value correction?
Popular Question 11 months ago, created a question with more than 1,000 views. For How to average replicate data using R (Column and Raw)
Student 12 months ago, asked a question with at least 3 up-votes. For Concept behind p-value correction?
Student 13 months ago, asked a question with at least 3 up-votes. For How to interpret PCA output statistically and biologically
Student 14 months ago, asked a question with at least 3 up-votes. For How to interpret PCA output statistically and biologically
Popular Question 16 months ago, created a question with more than 1,000 views. For How to plot a multiple line graph with Mean and Std Error for following dataset?
Popular Question 17 months ago, created a question with more than 1,000 views. For How to plot a multiple line graph with Mean and Std Error for following dataset?
Popular Question 17 months ago, created a question with more than 1,000 views. For How to plot a multiple line graph with Mean and Std Error for following dataset?
Centurion 18 months ago, created 100 posts.
Popular Question 18 months ago, created a question with more than 1,000 views. For How to plot a multiple line graph with Mean and Std Error for following dataset?

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