User: Wox

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Wox300
Reputation:
300
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16 hours ago
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2 years, 6 months ago
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Posts by Wox

<prev • 153 results • page 1 of 16 • next >
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Gene Ontology enrichment analysis of biological processes for up- and down-regulated genes?
... Is there any **FREE interactive online tool** for `Gene Ontology enrichment analysis of biological processes` for summarizing `up- and down-regulated` **Arabidopsis thaliana genes**? For example, figures look like below; If not, how can I do this in "R"? Could someone provide **Stepwise guida ...
R rna-seq written 28 days ago by Wox300 • updated 28 days ago by grant.hovhannisyan1.9k
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5 follow
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How to get the list of common genes from a VennDiagram?
... `**Package ‘![VennDiagram][1]’.**` How can I get the list of common objects in each combination? For e.g. what are the common 44 Genes in interset (similar image got from online)? I have used below scripts Overlap <- calculate.overlap(x = list(BB, BB, BRR)) Overlap[[1]] But in thi ...
R rna-seq written 4 weeks ago by Wox300 • updated 4 weeks ago by manuel.belmadani1.2k
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Comment: C: Mutant Transcript is higher than the WT. What may be the reason?
... Thank you @ATpoint and @Vitis. These are T-DNA mutants. May I ask if there is any protocol I can find to do what both of you have suggested. I am not a Bioinformatician tbh. ...
written 3 months ago by Wox300
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Comment: C: How to create a Venn Diagram from data frame and get the list of common Genes
... Thanks a heap, dsull :) Appreciate. ...
written 3 months ago by Wox300
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Comment: C: How to create a Venn Diagram from data frame and get the list of common Genes
... This is the answer I want :) Thank you dsull. BTW, How can I find what gene IDs went to each common category? How Can I export them out? ...
written 3 months ago by Wox300
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How to create a Venn Diagram from data frame and get the list of common Genes for combination?
... How to create a `Venn Diagram` `from data frame` and get the `list of common Genes` expressed in each combination? I have a data frame of DEG, How can I create a `Venn Diagram` `from data frame` and get the `list of common Genes`? Note: data frame has NA for some genotypes for some Genes, If ...
R rna-seq written 3 months ago by Wox300 • updated 3 months ago by dsull900
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Mutant Transcript is higher than the WT. What may be the reason?
... I used "Kallisto" pseudoaligning methods and have done my RNASeq analysis. One of my T-DNA knockout plants shows higher KO gene expression compared to the WT. These are published lines and I have already genotyped them by PCR and conformed they are T-DNA mutants. first I thought this is because o ...
assembly alignment kallisto rna-seq written 3 months ago by Wox300
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Comment: C: What is the difference between deferentially expressed genes and deferentially
... Thank you Pyretu. Appreciate. ...
written 3 months ago by Wox300
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Comment: C: What is the difference between deferentially expressed genes and deferentially
... Thank you dsull. Appreciate. ...
written 3 months ago by Wox300
0
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Comment: C: What is the difference between deferentially expressed genes and deferentially
... Thank you kristoffer. Appreciate. ...
written 3 months ago by Wox300

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Great Question 15 days ago, created a question with more than 5,000 views. For How to plot a multiple line graph with Mean and Std Error for following dataset?
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Popular Question 4 months ago, created a question with more than 1,000 views. For How to average replicate data using R (Column and Raw)
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Popular Question 9 months ago, created a question with more than 1,000 views. For How to plot a multiple line graph with Mean and Std Error for following dataset?
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Scholar 11 months ago, created an answer that has been accepted. For A: % of change and log2 fold change (L2FC)?
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