User: Wuschel

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Wuschel120
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HUJI
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4 days, 1 hour ago
Joined:
1 year, 9 months ago
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Posts by Wuschel

<prev • 100 results • page 1 of 10 • next >
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Where can I find Plant Transcriptomics / RNA-Seq lecture notes?
... I am looking for Plant (plastid vs. total) Transcriptomics / RNA-Seq lecture notes to self-study. Could anyone help me with useful resources (books/university lecture notes) ...
gene chip-seq rna-seq sequencing written 6 weeks ago by Wuschel120
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Comment: C: How to integrate and visualize RNASeq / Proteomics data for metabolomics pathway
... Thank you Kevin, I have a proteomics timecourse experiment of two genotypes vs WT. Would like to see the enrichment of these proteins for different metabolomics pathways. Something similar to below images. Later I am going to perform RNAseq, so preferably would like to visualize the data in the sa ...
written 10 weeks ago by Wuschel120
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Comment: C: How to integrate and visualize RNASeq / Proteomics data for metabolomics pathway
... Very kind of you Ariel. Looking forward to it. If I come across any solution will keep you informed too. Thank you. ...
written 10 weeks ago by Wuschel120
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How to integrate and visualize RNASeq / Proteomics data for metabolomics pathways?
... Does anyone have experience in integrating and visualizing RNASeq / Proteomics data for metabolomics pathways? Is there any user-friendly R package or free software available for this type of analysis? Would be grateful if you could direct me to the right place with accessible examples/tutorials. ...
proteomics R rna-seq metabolomics written 11 weeks ago by Wuschel120 • updated 10 weeks ago by ariel20
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How to export heatmap clusters to csv?
... I am unable to get gene names to heatmap in a readable font (> 600 genes). Is there any way that I could export clustering genes to a separate file (e.g. csv)? plot_heatmap(df, type = "centered", kmeans = TRUE, k = 6, col_limit = 2, show_row_names = T) ...
R rna-seq written 12 weeks ago by Wuschel120 • updated 12 weeks ago by Ashastry60
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Answer: A: % of change and log2 fold change (L2FC)?
... [calculate fold change (FC)][1] When comparing these log transformed values, we use the quotient rule of logarithms: >log(A/B) = log(A) - log(B) >log(A) = 4 >log(B) = 1 >Therefore: >log(A/B) = 4 - 1 >log(A/B) = 3 This gives a 3-fold change. Please note that in this case we ...
written 12 weeks ago by Wuschel120
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Comment: C: % of change and log2 fold change (L2FC)?
... Thank you @geek_y. After getting log2FC; e.g. -3.3, how can we calculate the % of change? is that %change = (Change/Original) x 100 ? ...
written 3 months ago by Wuschel120
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% of change and log2 fold change (L2FC)?
... I am trying to understand Gene expression data analysis. Could someone the percentage of change of the GE calculating from log2 fold change (L2FC)? > FoldChange = μ_Treatment / μ_Control > > log2FC=Log2(μ_Treatment)-Log2(μ_Control) ...
gene rna-seq written 3 months ago by Wuschel120
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Comment: C: How to plot Volcano plots for time course experiment: Omics data?
... Thank you, Kevin. Yes, I had a look at that. But I want to perform it in another standard statistical procedure. After data Imputation step from DEP package. ...
written 3 months ago by Wuschel120
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Comment: C: How to plot Volcano plots for time course experiment: Omics data?
... Hi Kevin, Yes. These are my data and I've normalized. I used DEP Package in bioconductor. ...
written 3 months ago by Wuschel120

Latest awards to Wuschel

Popular Question 29 days ago, created a question with more than 1,000 views. For How to plot a multiple line graph with Mean and Std Error for following dataset?
Popular Question 6 weeks ago, created a question with more than 1,000 views. For How to plot a multiple line graph with Mean and Std Error for following dataset?
Popular Question 9 weeks ago, created a question with more than 1,000 views. For How to plot a multiple line graph with Mean and Std Error for following dataset?
Centurion 11 weeks ago, created 100 posts.
Popular Question 11 weeks ago, created a question with more than 1,000 views. For How to plot a multiple line graph with Mean and Std Error for following dataset?
Scholar 12 weeks ago, created an answer that has been accepted. For A: % of change and log2 fold change (L2FC)?
Popular Question 4 months ago, created a question with more than 1,000 views. For How to reduce the length (size) of the dengrogram in heatmap.2
Popular Question 7 months ago, created a question with more than 1,000 views. For How to reduce the length (size) of the dengrogram in heatmap.2
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