User: Wox

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Wox440
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440
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HUJI
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an hour ago
Joined:
3 years, 6 months ago
Email:
y*******@gmail.com

Posts by Wox

<prev • 163 results • page 1 of 17 • next >
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Comment: C: The meaning of differentially expressed (DE) gene level
... Hi Devon, just curious to know, in DEG, what do you mean by between groups? If I have a time-course experiment (3-time points) with several genotypes (WT vs 3 different mutants); and my pairwise comparison is mut vs WT at its time point (e.g. 'mut1_0h-WT_0h', mut2_0h-WT_0h', etc), What does mean by ...
written 3 days ago by Wox440
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Comment: C: Why some statistically differently expressed genes are not DEGs?
... Hi @rpolicastro this is my own analysis based on this data analysis pipeline This experiment has 3 time points - 0 h/12h /24 hrs 4 genotypes - WT, 3 mutants (aox1/ aox2/ aox3) https://github.com/wyguo/ThreeDRNAseq/blob/master/vignettes/user_manuals/3D_RNA-seq_command_line_user_manual.md #Speci ...
written 3 days ago by Wox440
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Comment: C: In Gene ontology and KEGG analysis, What is the biological definition of p-value
... Thank you very much :) ...
written 7 months ago by Wox440
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In Gene ontology and KEGG analysis, What is the biological definition of p-value and (-) log10(FDR) value?
... In Gene ontology and KEGG analysis, Why there are two cutoff values; p-value and (-) log10(FDR) value? What is the role of these two cut-offs? Could bioinformatician give an explanation to a wet lab person? ...
genome gene next-gen rna-seq written 7 months ago by Wox440 • updated 7 months ago by jared.andrews078.6k
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How could I compare two Gene interaction Networks?
... What are the possible ways that I could compare two Gene interaction Networks? WT upregulated genes interaction network vs `Mutants upregulated genes interaction network` ...
genome gene rna-seq written 9 months ago by Wox440
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Comment: C: What is the meaning of (-) log10(FDR) value, How to compare higher negative valu
... Thank you very much, Prof. Hope you are keeping well. Stay safe and Blessed in this current situation :) ...
written 11 months ago by Wox440
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What is the meaning of (-) log10(FDR) value, How to compare higher negative value to lower negative value?
... What is the meaning of **(-) log10(FDR)** value How to interpret higher negative value to lower negative value by comparing each other? e.g. 1: Ribosome : *(-) log10(FDR) = 25* Golgi : *(-) log10(FDR) = 5* e.g. 2: [![enter image description here][1]][1] [1]: https://i.stack.imgur.com/zCAMa. ...
genome gene rna-seq R written 11 months ago by Wox440 • updated 11 months ago by Istvan Albert ♦♦ 86k
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Comment: C: bioconductor expressionset, summarizedexperiment
... Not for the top-level, Just after normalizing & Imputation steps! ...
written 11 months ago by Wox440
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Comment: C: bioconductor expressionset, summarizedexperiment
... Thank you, Just want to learn how to export data to csv files and working with dplyr. ...
written 11 months ago by Wox440
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bioconductor expressionset, summarizedexperiment
... Could you help me to find Intuitive Introductory resources to `bioconductor expressionset` and `summarizedexperiment` and learn how to work with SE data (At the end wanna handle edgeR, DEP, limma, and DESEQ2 packages by myself) Any gentle introduction? It seems difficult to get familiar with these ...
genome R bioconductor rna-seq written 12 months ago by Wox440

Latest awards to Wox

Great Question 15 days ago, created a question with more than 5,000 views. For How to plot a multiple line graph with Mean and Std Error for following dataset?
Epic Question 15 days ago, created a question with more than 10,000 views. For How to plot a multiple line graph with Mean and Std Error for following dataset?
Student 10 weeks ago, asked a question with at least 3 up-votes. For Concept behind p-value correction?
Great Question 7 months ago, created a question with more than 5,000 views. For How to plot a multiple line graph with Mean and Std Error for following dataset?
Great Question 7 months ago, created a question with more than 5,000 views. For How to average replicate data using R (Column and Raw)
Popular Question 7 months ago, created a question with more than 1,000 views. For Python Help: Plots are not appearing in the Spyder Console
Popular Question 7 months ago, created a question with more than 1,000 views. For How to export heatmap clusters to csv?
Popular Question 7 months ago, created a question with more than 1,000 views. For How to plot a multiple line graph with Mean and Std Error for following dataset?
Popular Question 7 months ago, created a question with more than 1,000 views. For Following PostHoc Tukey test and multiple comparision
Student 7 months ago, asked a question with at least 3 up-votes. For Concept behind p-value correction?
Great Question 12 months ago, created a question with more than 5,000 views. For How to plot a multiple line graph with Mean and Std Error for following dataset?

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