User: Wox
Wox • 300
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Posts by Wox
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4
votes
3
answers
131
views
9 follow
3
answers
... Is there any **FREE interactive online tool** for `Gene Ontology enrichment analysis of biological processes` for summarizing `up- and down-regulated` **Arabidopsis thaliana genes**?
For example, figures look like below;
If not, how can I do this in "R"? Could someone provide **Stepwise guida ...
written 28 days ago by
Wox • 300
• updated
28 days ago by
grant.hovhannisyan • 1.9k
6
votes
1
answer
113
views
5 follow
1
answer
... `**Package ‘![VennDiagram][1]’.**` How can I get the list of common objects in each combination?
For e.g. what are the common 44 Genes in interset (similar image got from online)?
I have used below scripts
Overlap <- calculate.overlap(x = list(BB, BB, BRR))
Overlap[[1]]
But in thi ...
written 4 weeks ago by
Wox • 300
• updated
4 weeks ago by
manuel.belmadani • 1.2k
0
votes
0
answers
152
views
0
answers
... Thank you @ATpoint and @Vitis.
These are T-DNA mutants.
May I ask if there is any protocol I can find to do what both of you have suggested. I am not a Bioinformatician tbh.
...
written 3 months ago by
Wox • 300
0
votes
1
answer
314
views
1
answers
... Thanks a heap, dsull :) Appreciate. ...
written 3 months ago by
Wox • 300
0
votes
1
answer
314
views
1
answers
... This is the answer I want :) Thank you dsull. BTW, How can I find what gene IDs went to each common category? How Can I export them out? ...
written 3 months ago by
Wox • 300
9
votes
1
answer
314
views
6 follow
1
answer
... How to create a `Venn Diagram` `from data frame` and get the `list of common Genes` expressed in each combination?
I have a data frame of DEG, How can I create a `Venn Diagram` `from data frame` and get the `list of common Genes`?
Note: data frame has NA for some genotypes for some Genes, If ...
2
votes
0
answers
152
views
0
answers
... I used "Kallisto" pseudoaligning methods and have done my RNASeq analysis.
One of my T-DNA knockout plants shows higher KO gene expression compared to the WT.
These are published lines and I have already genotyped them by PCR and conformed they are T-DNA mutants.
first I thought this is because o ...
written 3 months ago by
Wox • 300
0
votes
1
answer
282
views
1
answers
... Thank you Pyretu. Appreciate. ...
written 3 months ago by
Wox • 300
0
votes
1
answer
282
views
1
answers
... Thank you dsull. Appreciate. ...
written 3 months ago by
Wox • 300
0
votes
1
answer
282
views
1
answers
... Thank you kristoffer. Appreciate. ...
written 3 months ago by
Wox • 300
Latest awards to Wox
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For HeatMap: how to cluster only the rows and keep order of the heatmap's column labels as same as in the df?
Appreciated
15 days ago,
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For Could you explain the difference between STAR, KALLISTO, SALMON etc. to experimental Biologist/non-bioinformatician
Great Question
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For How to plot a multiple line graph with Mean and Std Error for following dataset?
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created a question with more than 1,000 views.
For HeatMap: how to cluster only the rows and keep order of the heatmap's column labels as same as in the df?
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28 days ago,
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For Concept behind p-value correction?
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12 weeks ago,
created a question with more than 1,000 views.
For HeatMap: how to cluster only the rows and keep order of the heatmap's column labels as same as in the df?
Popular Question
4 months ago,
created a question with more than 1,000 views.
For HeatMap: how to cluster only the rows and keep order of the heatmap's column labels as same as in the df?
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4 months ago,
created a question with more than 1,000 views.
For How to average replicate data using R (Column and Raw)
Student
4 months ago,
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For Concept behind p-value correction?
Student
6 months ago,
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For How to interpret PCA output statistically and biologically
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7 months ago,
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For How to interpret PCA output statistically and biologically
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9 months ago,
created a question with more than 1,000 views.
For How to plot a multiple line graph with Mean and Std Error for following dataset?
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9 months ago,
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For How to plot a multiple line graph with Mean and Std Error for following dataset?
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10 months ago,
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For How to plot a multiple line graph with Mean and Std Error for following dataset?
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10 months ago,
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For A: % of change and log2 fold change (L2FC)?
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