User: EverInEarnest

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Posts by EverInEarnest

<prev • 16 results • page 1 of 2 • next >
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Comment: C: Converting between drug identifier formats
... Thanks, Wolf! That resource looks very useful; I will check it out. ...
written 25 days ago by EverInEarnest20
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Comment: C: Converting between drug identifier formats
... Many thanks, Zhilong! That is exactly what I needed! ...
written 25 days ago by EverInEarnest20
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Converting between drug identifier formats
... I have two CSV files of drug-related data. One has the drug info specified with CHEMBL identifiers, whereas the second file contains DrugBank and PubChem IDs. I need to compare these two files for overlap in their drug contents. Both files contain drug names in string format, but working with those ...
database drug conversion written 26 days ago by EverInEarnest20 • updated 25 days ago by Wolf Ihlenfeldt30
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Comment: C: Formatting problem when converting from UniProt to Entrez Gene ID format
... Many thanks for your detailed response, Kevin; I have also been exploring another route, and will consider your suggestions along with my current efforts; I'll plan to post what works. ...
written 9 weeks ago by EverInEarnest20
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Comment: C: How to obtain DrugBank Drug Name and SMILES Data from DrugBank ID?
... Thank you, cannin!! I will try your strategy. ...
written 10 weeks ago by EverInEarnest20
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Formatting problem when converting from UniProt to Entrez Gene ID format
... My code below reads in a file of a subset of the DrugBank data, and then calls UniProt.ws() to map the UniProt IDs of the drug targets to Entrez Gene ID format. This code runs and generates the output file, but the output is incorrect, and I am confused by the following issues: My input file contai ...
R uniprot conversion entrez written 10 weeks ago by EverInEarnest20 • updated 9 weeks ago by Kevin Blighe7.1k
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Comment: C: How to obtain DrugBank Drug Name and SMILES Data from DrugBank ID?
... Could you clarify where the SMILES file and other similar DrugBank files are available? I have reviewed the DrugBank site's contents, and see the full database available for download, as well as this page: https://www.drugbank.ca/releases/latest#protein-identifiers that allows download of the target ...
written 10 weeks ago by EverInEarnest20
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Comment: C: How to obtain DrugBank Drug Name and SMILES Data from DrugBank ID?
... Thanks for your suggestion, Bjorn; I will pursue your suggested method. ...
written 10 weeks ago by EverInEarnest20
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How to obtain DrugBank Drug Name and SMILES Data from DrugBank ID?
... I have downloaded the complete set of target data from the DrugBank site (available here: https://www.drugbank.ca/releases/latest#protein-identifiers). Each row contains data for one target; the final column of each row lists N DrugBank IDs for the N drugs associated with that target. For each Drug ...
R drugbank written 10 weeks ago by EverInEarnest20 • updated 10 weeks ago by cannin230
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Comment: C: Automated method to translate DrugBank Biological Entity (BE) drug target IDs to
... Update: I had also previously inquired with the DrugBank staff to resolve my questions, and I was provided with this informative response: "Each target in the XML file contains 1 or more Polypeptide entries. Each of these entries contains an ID which is the UniProt ID. A target can contain more tha ...
written 10 weeks ago by EverInEarnest20

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