User: tylertibetli

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Posts by tylertibetli

<prev • 5 results • page 1 of 1 • next >
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Comment: C: Pathogenic Variants in a Genomic interval
... Thank you for assistance, I ve downloaded Clinvar records as VCF, but tabix is not working properly for the overlapping. I' ve sorted VCF and Bed files but appearing some errors such as "[ti_index_core ] the file out of order at line 5" . Should I remove the header lines of VCF? ...
written 10 weeks ago by tylertibetli0
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Comment: C: Pathogenic Variants in a Genomic interval
... Dear Emily, thank you for the help, I tried the website and want to ask that is possible to upload BED file for the region, it didn' work and I 've changed the format of BED file as 1:123425:112356:1 , but still didn't return back any data I didn't understand the problem :( ...
written 10 weeks ago by tylertibetli0
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Pathogenic Variants in a Genomic interval
... Hello Guys, I would like to ask that if it is possible to find all the Clinvar pathogenic mutations in a given genomic interval. After an RNA-seq analysis, I got more than 100 genomic intervals as a BED file and I didn't find an easy way to find all the pathogenic mutations in the genomic intervals ...
bed clinvar pathogenic genomic interval written 10 weeks ago by tylertibetli0 • updated 10 weeks ago by Emily_Ensembl19k
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Comment: A: Total count of specific location on IGV
... Dear Samarth, Thank you for your assistance, best regards, Tyler ...
written 21 months ago by tylertibetli0
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Total count of specific location on IGV
... Total count of specific location on IGV is 12372 but when I look at the reads on IGV there are 251 reads,Do you know What is the problem? ...
next-gen alignment sequencing written 23 months ago by tylertibetli0

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Popular Question 21 months ago, created a question with more than 1,000 views. For Total count of specific location on IGV

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