User: Ambika
Ambika • 20
- Reputation:
- 20
- Status:
- New User
- Location:
- United States/Auburn/Auburn University
- Last seen:
- 3 days, 17 hours ago
- Joined:
- 7 months, 2 weeks ago
- Email:
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Posts by Ambika
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C: Gene enrichment analysis
... Thank you I will try that ...
written 3 days ago by
Ambika • 20
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... Hello everyone,,
I am working with RNAseq data from a fungi for which we don't have genome annotation. I have a draft genome and list of predicted genes from Augustus. From RNAseq I have list of genes for which I want to do enrichment analysis. I tried to use DAVID for which I tried to get UniProt ...
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... Hi, h.mon, I was looking on how can I associate each identified gene with UniProt identifier, but I am lost. Can you suggest a way I can do that.
...
written 5 days ago by
Ambika • 20
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... Yes you are right I have an assembled draft genome. Right now I am trying to blast my draft genome using Blast2Go and looks like it will take forever. I will try the other idea you said using UniProt. Thank you h.mon for helping. ...
written 5 days ago by
Ambika • 20
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... No it is not published and not annotated ...
written 5 days ago by
Ambika • 20
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... Hello everyone,
I used STAR-HTseq-DESeq2 pipleline to analyse my RNAseq data and now I have list of differentially expressed genes. I want to do the enrichment analysis of the list of genes obtained from DEseq2. I tried to use DAVID but it didn't work for me since I am working with non-model organ ...
written 6 days ago by
Ambika • 20
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C: arranging columns and rows
... Thank you so much for your help. ...
written 7 days ago by
Ambika • 20
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Comment:
C: arranging columns and rows
... Hi Pierre,
Thank you but the problem is I got the output file but the number of rows that I have for output file is not the same as in File 2. ...
written 7 days ago by
Ambika • 20
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Comment:
C: arranging columns and rows
... Yes its present twice, and this is just a sample some of the genes might be present more than that because single gene might have different pfam domains. ...
written 7 days ago by
Ambika • 20
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... Hello everyone,
I have File 1 like this with 2 columns:
g4989 2.70224323450382
g4650 2.71483380183318
g11701 2.83907744860811
g11701 2.83907744860811
g3807 2.83912968405616
g17931 2.84821618321646
and File 2 like this with 4 columns
g4989
g4650 Pfam ...
written 7 days ago by
Ambika • 20
• updated
7 days ago by
Pierre Lindenbaum ♦ 106k
Latest awards to Ambika
Rising Star
5 months ago,
created 50 posts within first three months of joining.
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