User: Ambika

gravatar for Ambika
Ambika20
Reputation:
20
Status:
New User
Location:
United States/Auburn/Auburn University
Last seen:
3 days, 17 hours ago
Joined:
7 months, 2 weeks ago
Email:
a***************@gmail.com

Posts by Ambika

<prev • 83 results • page 1 of 9 • next >
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Comment: C: Gene enrichment analysis
... Thank you I will try that ...
written 3 days ago by Ambika20
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Gene enrichment analysis
... Hello everyone,, I am working with RNAseq data from a fungi for which we don't have genome annotation. I have a draft genome and list of predicted genes from Augustus. From RNAseq I have list of genes for which I want to do enrichment analysis. I tried to use DAVID for which I tried to get UniProt ...
gene_enrichment david blast2go uniprot written 4 days ago by Ambika20 • updated 4 days ago by Buffo1.1k
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Comment: C: Enrichment analysis of Differentially expressed genes
... Hi, h.mon, I was looking on how can I associate each identified gene with UniProt identifier, but I am lost. Can you suggest a way I can do that. ...
written 5 days ago by Ambika20
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Comment: C: Enrichment analysis of Differentially expressed genes
... Yes you are right I have an assembled draft genome. Right now I am trying to blast my draft genome using Blast2Go and looks like it will take forever. I will try the other idea you said using UniProt. Thank you h.mon for helping. ...
written 5 days ago by Ambika20
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Comment: C: Enrichment analysis of Differentially expressed genes
... No it is not published and not annotated ...
written 5 days ago by Ambika20
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Enrichment analysis of Differentially expressed genes
... Hello everyone, I used STAR-HTseq-DESeq2 pipleline to analyse my RNAseq data and now I have list of differentially expressed genes. I want to do the enrichment analysis of the list of genes obtained from DEseq2. I tried to use DAVID but it didn't work for me since I am working with non-model organ ...
rna-seq enrichment analysis written 6 days ago by Ambika20
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Comment: C: arranging columns and rows
... Thank you so much for your help. ...
written 7 days ago by Ambika20
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Comment: C: arranging columns and rows
... Hi Pierre, Thank you but the problem is I got the output file but the number of rows that I have for output file is not the same as in File 2. ...
written 7 days ago by Ambika20
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Comment: C: arranging columns and rows
... Yes its present twice, and this is just a sample some of the genes might be present more than that because single gene might have different pfam domains. ...
written 7 days ago by Ambika20
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arranging columns and rows
... Hello everyone, I have File 1 like this with 2 columns: g4989 2.70224323450382 g4650 2.71483380183318 g11701 2.83907744860811 g11701 2.83907744860811 g3807 2.83912968405616 g17931 2.84821618321646 and File 2 like this with 4 columns g4989 g4650 Pfam ...
grep awk bash written 7 days ago by Ambika20 • updated 7 days ago by Pierre Lindenbaum106k

Latest awards to Ambika

Rising Star 5 months ago, created 50 posts within first three months of joining.

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